Loading ChangeLog +13 −0 Original line number Diff line number Diff line 2019.08.30 Fixed the clustercentroids routine in python/clustermodule.c. Changed src/cluster.c and python/clustermodule.c to be consistent with PEP7. Added tests to the Python unit tests. 2019.04.26 Moved Windows-specific code from src/cluster.c to windows/library.c. Fixed a memory leak in X11/gui.c. Expanded doctests in python/__init__.py. Fixed a bug in the treecluster routine in python/clustermodule.c that caused the weight argument to be checked if the distance matrix was provided. Cleaned up formatting in python/test/test_Cluster.py. 2018.11.22 Fixed memory leaks in kcluster and treecluster in src/cluster.c, and in Hierarchical and KMeans in src/command.c; these memory leaks occurred when Loading INSTALL +1 −1 Original line number Diff line number Diff line Loading @@ -92,7 +92,7 @@ You may need to log in as root the install Pycluster. If you do not have root access, do python setup.py install --prefix=/some/other/directory and set the environment variable PYTHONPATH=/some/other/directory/lib/python2.2/site-packages PYTHONPATH=/some/other/directory/lib/python2.6/site-packages The exact command depends on which shell you are using; the exact path will depend on the version of Python you are using. To use Pycluster, you will also need numpy (Numerical Python). Pycluster was Loading Makefile.am +2 −1 Original line number Diff line number Diff line Loading @@ -3,7 +3,8 @@ DOCDIST = doc/cluster.pdf doc/cluster3.pdf doc/cluster.texinfo \ doc/cluster3.texinfo doc/structure.eps doc/Makefile WINDIST = windows/cluster.hhp windows/cluster.ico windows/cluster.iss \ windows/main.c windows/gui.c windows/format.bmp windows/Makefile \ windows/main.c windows/gui.c windows/library.c \ windows/format.bmp windows/Makefile \ windows/resources.h windows/resources.rc MACDIST = mac/main.m mac/Controller.h mac/Controller.m mac/cluster.icns \ mac/English.lproj/InfoPlist.strings \ Loading Makefile.in +2 −1 Original line number Diff line number Diff line Loading @@ -297,7 +297,8 @@ DOCDIST = doc/cluster.pdf doc/cluster3.pdf doc/cluster.texinfo \ doc/cluster3.texinfo doc/structure.eps doc/Makefile WINDIST = windows/cluster.hhp windows/cluster.ico windows/cluster.iss \ windows/main.c windows/gui.c windows/format.bmp windows/Makefile \ windows/main.c windows/gui.c windows/library.c \ windows/format.bmp windows/Makefile \ windows/resources.h windows/resources.rc MACDIST = mac/main.m mac/Controller.h mac/Controller.m mac/cluster.icns \ Loading NEWS +4 −7 Original line number Diff line number Diff line 2018.11.22 Fixed memory leaks in kcluster and treecluster in src/cluster.c, and in Hierarchical and KMeans in src/command.c; these memory leaks occurred when memory allocation failed. Fixed a bug in the distancematrix function Bio/Cluster/__init__.py, where the weight argument was not properly initialized if it had the default value None, causing the function to fail. 2019.08.30 Fixed the clustercentroids routine in python/clustermodule.c. Changed src/cluster.c and python/clustermodule.c to be consistent with PEP7. Added tests to the Python unit tests. Loading
ChangeLog +13 −0 Original line number Diff line number Diff line 2019.08.30 Fixed the clustercentroids routine in python/clustermodule.c. Changed src/cluster.c and python/clustermodule.c to be consistent with PEP7. Added tests to the Python unit tests. 2019.04.26 Moved Windows-specific code from src/cluster.c to windows/library.c. Fixed a memory leak in X11/gui.c. Expanded doctests in python/__init__.py. Fixed a bug in the treecluster routine in python/clustermodule.c that caused the weight argument to be checked if the distance matrix was provided. Cleaned up formatting in python/test/test_Cluster.py. 2018.11.22 Fixed memory leaks in kcluster and treecluster in src/cluster.c, and in Hierarchical and KMeans in src/command.c; these memory leaks occurred when Loading
INSTALL +1 −1 Original line number Diff line number Diff line Loading @@ -92,7 +92,7 @@ You may need to log in as root the install Pycluster. If you do not have root access, do python setup.py install --prefix=/some/other/directory and set the environment variable PYTHONPATH=/some/other/directory/lib/python2.2/site-packages PYTHONPATH=/some/other/directory/lib/python2.6/site-packages The exact command depends on which shell you are using; the exact path will depend on the version of Python you are using. To use Pycluster, you will also need numpy (Numerical Python). Pycluster was Loading
Makefile.am +2 −1 Original line number Diff line number Diff line Loading @@ -3,7 +3,8 @@ DOCDIST = doc/cluster.pdf doc/cluster3.pdf doc/cluster.texinfo \ doc/cluster3.texinfo doc/structure.eps doc/Makefile WINDIST = windows/cluster.hhp windows/cluster.ico windows/cluster.iss \ windows/main.c windows/gui.c windows/format.bmp windows/Makefile \ windows/main.c windows/gui.c windows/library.c \ windows/format.bmp windows/Makefile \ windows/resources.h windows/resources.rc MACDIST = mac/main.m mac/Controller.h mac/Controller.m mac/cluster.icns \ mac/English.lproj/InfoPlist.strings \ Loading
Makefile.in +2 −1 Original line number Diff line number Diff line Loading @@ -297,7 +297,8 @@ DOCDIST = doc/cluster.pdf doc/cluster3.pdf doc/cluster.texinfo \ doc/cluster3.texinfo doc/structure.eps doc/Makefile WINDIST = windows/cluster.hhp windows/cluster.ico windows/cluster.iss \ windows/main.c windows/gui.c windows/format.bmp windows/Makefile \ windows/main.c windows/gui.c windows/library.c \ windows/format.bmp windows/Makefile \ windows/resources.h windows/resources.rc MACDIST = mac/main.m mac/Controller.h mac/Controller.m mac/cluster.icns \ Loading
NEWS +4 −7 Original line number Diff line number Diff line 2018.11.22 Fixed memory leaks in kcluster and treecluster in src/cluster.c, and in Hierarchical and KMeans in src/command.c; these memory leaks occurred when memory allocation failed. Fixed a bug in the distancematrix function Bio/Cluster/__init__.py, where the weight argument was not properly initialized if it had the default value None, causing the function to fail. 2019.08.30 Fixed the clustercentroids routine in python/clustermodule.c. Changed src/cluster.c and python/clustermodule.c to be consistent with PEP7. Added tests to the Python unit tests.
