fix rebuild error bug #925568

cnvkit (0.9.5-3) UNRELEASED; urgency=medium

  * Fix buster rebuilds (Closes: #925568)

    d/patches/controldir.patch

 -- Olivier Sallou <osallou@debian.org>  Wed, 27 Mar 2019 08:00:39 +0000

cnvkit (0.9.5-2) unstable; urgency=medium

  [ Jelmer Vernooij ]

Subject: do not create dir if it exists

Description: command tries to create an output dir during tests, even if it

 already exists, raising an error. Skip creation if already present

Author: Olivier Sallou <osallou@debian.org>

Bug: 925568

Forwaded: no

Last-Updated: 2019-03-27

--- a/cnvlib/commands.py

+++ b/cnvlib/commands.py

@@ -1365,8 +1365,9 @@

                             'anti' if 'antitarget' in fname else ''))

         if args.output_dir:

             if not os.path.isdir(args.output_dir):

-                os.mkdir(args.output_dir)

-                logging.info("Created directory %s", args.output_dir)

+                if not os.path.exists(args.output_dir):

+                    os.mkdir(args.output_dir)

+                    logging.info("Created directory %s", args.output_dir)

             outfname = os.path.join(args.output_dir, outfname)

         tabio.write(garr, outfname)

no-py-ext

python3compat.patch

spelling

controldir