debian/changelog

-codonw (1.4.4-4) UNRELEASED; urgency=low
+codonw (1.4.4-4) unstable; urgency=medium
 
+  [ Steffen Moeller ]
   * debian/upstream/metadata:
     - Added ref to OMICtools
     - Added associated paper
   * Corrected upstream name to codonW
 
- -- Steffen Moeller <moeller@debian.org>  Thu, 03 Aug 2017 13:14:59 +0200
+  [ Dylan Aïssi ]
+  * Fix OMICS ID
+
+  [ Sascha Steinbiss ]
+  * Use secure d/copyright format link.
+  * Use debhelper 11.
+  * Bump Standards-Version.
+  * Remove unnecessary patch file.
+  * Update Uploader email address.
+  * Update Vcs-* fields with Salsa addresses.
+  * Fix whitespace issue in changelog.
+  * Use recent Lintian override names.
+
+ -- Sascha Steinbiss <satta@debian.org>  Wed, 04 Jul 2018 18:52:50 +0200
 
 codonw (1.4.4-3) unstable; urgency=low
 

debian/compat

-9
+11

debian/control

@@ -2,12 +2,12 @@ Source: codonw
 Section: science
 Priority: optional
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
-Uploaders: Sascha Steinbiss <sascha@steinbiss.name>
-Build-Depends: debhelper (>= 9),
+Uploaders: Sascha Steinbiss <satta@debian.org>
+Build-Depends: debhelper (>= 11),
                help2man
-Standards-Version: 3.9.7
-Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/codonw.git
-Vcs-Git: https://anonscm.debian.org/git/debian-med/codonw.git
+Standards-Version: 4.1.4
+Vcs-Browser: https://salsa.debian.org/med-team/codonw
+Vcs-Git: https://salsa.debian.org/med-team/codonw.git
 Homepage: http://codonw.sourceforge.net
 
 Package: codonw

debian/copyright

-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: codonW
 Source: http://sourceforge.net/projects/codonw/
 Files-Excluded: CVS

debian/patches/hardening.patch

---- a/Makefile
-+++ b/Makefile
-@@ -1,10 +1,17 @@
-+override cflags  = $(CFLAGS) -g
-+
- objects  = codon_us.o codons.o open_fil.o commline.o menu.o tester.o coresp.o
- linked   = rscu cu aau raau tidy reader cutab cutot transl bases base3s dinuc cai fop gc3s gc cbi enc
- 
-+CC=cc
-+CFLAGS= -O -DBSD
-+LN=ln -f
-+
-+
- all: codonw links
- 
- codonw: $(objects)
--	$(CC) $(CFLAGS) $(LDFLAGS) $(objects) -o codonw -lm
-+	$(CC) $(CFLAGS)  $(objects) -o codonw -lm
- 
- clean:
- 	\rm -f $(objects)
-@@ -16,25 +23,25 @@
- 	\rm -f $(objects) codonw Makefile $(linked)
- 
- codon_us.o: codon_us.c codonW.h
--	$(CC) -c $(CFLAGS) $(CPPFLAGS) codon_us.c
-+	$(CC) -c $(CFLAGS) codon_us.c
- 
- menu.o: menu.c codonW.h
--	$(CC) -c $(CFLAGS) $(CPPFLAGS) menu.c
-+	$(CC) -c $(CFLAGS) menu.c
- 
- codons.o: codons.c codonW.h
--	$(CC) -c $(CFLAGS) $(CPPFLAGS) codons.c
-+	$(CC) -c $(CFLAGS) codons.c
- 
- coresp.o: coresp.c codonW.h
--	$(CC) -c $(CFLAGS) $(CPPFLAGS) coresp.c
-+	$(CC) -c $(CFLAGS) coresp.c
- 
- open_fil.o:    open_fil.c codonW.h
--	$(CC) -c $(CFLAGS) $(CPPFLAGS) open_fil.c
-+	$(CC) -c $(CFLAGS) open_fil.c
- 
- commline.o:    commline.c codonW.h
--	$(CC) -c $(CFLAGS) $(CPPFLAGS) commline.c
-+	$(CC) -c $(CFLAGS) commline.c
- 
- tester.o:      tester.c codonW.h
--	$(CC) -c $(CFLAGS) $(CPPFLAGS) tester.c
-+	$(CC) -c $(CFLAGS) tester.c
- 
- links: codonw
- 		$(LN) codonw rscu

debian/source.lintian-overrides

 # Upstream does not provide signed tarballs.
-codonw source: debian-watch-may-check-gpg-signature
+codonw source: debian-watch-does-not-check-gpg-signature