debian/changelog

+consensuscore (1.0.2-3) unstable; urgency=medium
+
+  * Team upload.
+  * debhelper 11
+  * Point Vcs fields to salsa.debian.org
+  * Standards-Version: 4.1.5
+  * Testsuite: autopkgtest-pkg-python
+  * d/rules:
+     - hardening=+all
+     - respect DEB_BUILD_OPTIONS in override_dh_auto_test
+
+ -- Andreas Tille <tille@debian.org>  Sat, 14 Jul 2018 17:26:27 +0200
+
 consensuscore (1.0.2-2) unstable; urgency=low
 
   * Fix build with GCC-6 (Closes: #831172)

debian/compat

-9
+11

debian/control

 Source: consensuscore
-Section: science
-Priority: optional
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Uploaders: Afif Elghraoui <afif@debian.org>
-Build-Depends:
-	debhelper (>= 9),
-	dh-python,
-	dh-exec,
-	libboost-dev,
-	swig,
+Section: science
+Testsuite: autopkgtest-pkg-python
+Priority: optional
+Build-Depends: debhelper (>= 11~),
+               dh-python,
+               dh-exec,
+               libboost-dev,
+               swig,
 # Python2
-	python-setuptools,
-	python-all-dev,
-	python-numpy,
+               python-setuptools,
+               python-all-dev,
+               python-numpy,
 # Python3
-	python3-setuptools,
-	python3-all-dev,
-	python3-numpy,
-Standards-Version: 3.9.8
+               python3-setuptools,
+               python3-all-dev,
+               python3-numpy
+Standards-Version: 4.1.5
+Vcs-Browser: https://salsa.debian.org/med-team/consensuscore
+Vcs-Git: https://salsa.debian.org/med-team/consensuscore.git
 Homepage: https://github.com/PacificBiosciences/ConsensusCore
-Vcs-Git: https://anonscm.debian.org/git/debian-med/consensuscore.git
-Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/consensuscore.git
 
 Package: libconsensuscore-dev
-Section: libdevel
 Architecture: any-amd64 any-i386
-Depends:
-	${shlibs:Depends},
-	${misc:Depends},
+Section: libdevel
+Depends: ${shlibs:Depends},
+         ${misc:Depends}
 Description: algorithms for PacBio multiple sequence consensus -- development files
  ConsensusCore is a library of C++ algorithms for Pacific Biosciences
  multiple sequence consensus that powers Quiver (Python) and ConsensusTools
@@ -38,12 +37,11 @@ Description: algorithms for PacBio multiple sequence consensus -- development fi
  It provides the header files and static library.
 
 Package: python-pbconsensuscore
-Section: python
 Architecture: any-amd64 any-i386
-Depends:
-	${shlibs:Depends},
-	${misc:Depends},
-	${python:Depends},
+Section: python
+Depends: ${shlibs:Depends},
+         ${misc:Depends},
+         ${python:Depends}
 Description: algorithms for PacBio multiple sequence consensus -- Python 2
  ConsensusCore is a library of C++ algorithms for Pacific Biosciences
  multiple sequence consensus that powers Quiver (Python) and ConsensusTools
@@ -54,12 +52,11 @@ Description: algorithms for PacBio multiple sequence consensus -- Python 2
  It provides the Python2 bindings.
 
 Package: python3-pbconsensuscore
-Section: python
 Architecture: any-amd64 any-i386
-Depends:
-	${shlibs:Depends},
-	${misc:Depends},
-	${python3:Depends},
+Section: python
+Depends: ${shlibs:Depends},
+         ${misc:Depends},
+         ${python3:Depends}
 Description: algorithms for PacBio multiple sequence consensus -- Python 3
  ConsensusCore is a library of C++ algorithms for Pacific Biosciences
  multiple sequence consensus that powers Quiver (Python) and ConsensusTools

debian/rules

@@ -6,15 +6,19 @@
 export LC_ALL=C.UTF-8
 export PYBUILD_NAME=pbconsensuscore
 
+export DEB_BUILD_MAINT_OPTIONS=hardening=+all
+
 %:
 	dh $@ --with python2,python3 --buildsystem=pybuild
 
 override_dh_auto_test:
+ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
 	$(MAKE) test
 # We can't run these additional tests because they only pass
 # with the python2 version of the package; by this point
 # the python3 version has taken over.
 #	$(MAKE) test-python
+endif
 
 override_dh_python2:
 	dh_python2