debian/changelog

+deepnano (0.0+git20170813.e8a621e-3) unstable; urgency=medium
+
+  * Use less data for autopkgtest
+    Closes: #921566
+  * debhelper 12
+  * Standards-Version: 4.3.0
+
+ -- Andreas Tille <tille@debian.org>  Thu, 07 Feb 2019 08:25:35 +0100
+
 deepnano (0.0+git20170813.e8a621e-2) unstable; urgency=medium
 
   * Enable separate build of Architecture: all package

debian/compat

-11
+12

debian/control

@@ -4,12 +4,12 @@ Uploaders: Çağrı ULAŞ <cagriulas@gmail.com>,
            Andreas Tille <tille@debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 11~),
+Build-Depends: debhelper (>= 12~),
                python-all,
                dh-python,
                python-markdown,
                python-theano
-Standards-Version: 4.1.4
+Standards-Version: 4.3.0
 Vcs-Browser: https://salsa.debian.org/med-team/deepnano
 Vcs-Git: https://salsa.debian.org/med-team/deepnano.git
 Homepage: https://bitbucket.org/vboza/deepnano

debian/tests/run-test.sh

-#!/bin/bash
-set -e
+#!/bin/sh -e
 
-pkg_name="deepnano"
-test_required_pkg="deepnano-data"
+pkg="deepnano"
+test_required_pkg="${pkg}-data"
+datadir=/usr/share/poretools/data
 
 if [ "$AUTOPKGTEST_TMP" = "" ] ; then
   AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
@@ -11,9 +11,12 @@ fi
 
 cp -a /usr/share/${test_required_pkg}/* $AUTOPKGTEST_TMP
 mkdir -p $AUTOPKGTEST_TMP/test_data/
-cp -a /usr/share/poretools/data/* $AUTOPKGTEST_TMP/test_data/
+
+# Copy only 10 data sets since test with all data takes to long
+for d in `ls $datadir | sort | head -n10` ; do cp $datadir/$d $AUTOPKGTEST_TMP/test_data/ ; done
 
 cd $AUTOPKGTEST_TMP
+
 find . -name "*gz" -exec gunzip \{\} \;
 #echo '!!!!!!!!!!'
 #ls -R