Commit e83bc042 authored by Steffen Möller's avatar Steffen Möller
Browse files

Uploaded to unstable.

parent e8ce40ae

debian/changelog

+1 −1
Original line number Diff line number Diff line 
diamond-aligner (0.9.26+dfsg-1) UNRELEASED; urgency=medium

diamond-aligner (0.9.26+dfsg-1) unstable; urgency=medium



  * Team upload.

  * New upstream version

debian/patches/82feea2aee5c82e283704b9317cb5e8abc625f90.patch

+7 −7
Original line number Diff line number Diff line
@@ -7,16 +7,16 @@ Subject: [PATCH] Fixed #295. 
 src/dp/needleman_wunsch.cpp | 2 +-

 1 file changed, 1 insertion(+), 1 deletion(-)



diff --git a/src/dp/needleman_wunsch.cpp b/src/dp/needleman_wunsch.cpp

index abb47bb..2050eea 100644

--- a/src/dp/needleman_wunsch.cpp

+++ b/src/dp/needleman_wunsch.cpp

@@ -167,7 +167,7 @@ const Fixed_score_buffer<_score>& needleman_wunsch(sequence query, sequence subj

Index: diamond-aligner/src/dp/needleman_wunsch.cpp

===================================================================

--- diamond-aligner.orig/src/dp/needleman_wunsch.cpp

+++ diamond-aligner/src/dp/needleman_wunsch.cpp

@@ -167,7 +167,7 @@ const Fixed_score_buffer<_score>& needle

 	return mtx.score_buffer();

 }

 

-template const Fixed_score_buffer<int>& needleman_wunsch(sequence query, sequence subject, int &max_score, const Local&, const int&);

+// template const Fixed_score_buffer<int>& needleman_wunsch(sequence query, sequence subject, int &max_score, const Local&, const int&);

-template const Fixed_score_buffer<int>& needleman_wunsch<int, Local>(sequence query, sequence subject, int &max_score, const Local&, const int&);

+//template const Fixed_score_buffer<int>& needleman_wunsch<int, Local>(sequence query, sequence subject, int &max_score, const Local&, const int&);

 

 int needleman_wunsch(sequence query, sequence subject, int qbegin, int qend, int sbegin, int send, unsigned node, unsigned edge, Diag_graph &diags, bool log)

 {

debian/patches/no_march_native.patch

+5 −3
Original line number Diff line number Diff line
@@ -3,9 +3,11 @@ Bug-Debian: https://bugs.debian.org/906615 
Author: Andreas Tille <tille@debian.org>

Last-Update: Sun, 19 Aug 2018 06:38:58 +0200



--- a/CMakeLists.txt

+++ b/CMakeLists.txt

@@ -14,10 +14,10 @@ if(CMAKE_BUILD_MARCH)

Index: diamond-aligner/CMakeLists.txt

===================================================================

--- diamond-aligner.orig/CMakeLists.txt

+++ diamond-aligner/CMakeLists.txt

@@ -38,10 +38,10 @@ elseif(CMAKE_BUILD_MARCH)

   set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -march=${CMAKE_BUILD_MARCH}")

 else()

   include(CheckCXXCompilerFlag)