Commit 0a25d266 authored by Andreas Tille's avatar Andreas Tille
Browse files

dh_auto_build works now

parent 6b87aec1

debian/patches/use_debian_packaged_gatb-core.patch

+40 −16
Original line number Diff line number Diff line
@@ -17,27 +17,39 @@ Description: Use cmake input file of Debian packaged gatb-core 
 # THIRD PARTIES

--- a/tools/QHC/CMakeLists.txt

+++ b/tools/QHC/CMakeLists.txt

@@ -22,7 +22,9 @@ set(EXECUTABLE_OUTPUT_PATH ${PROJECT_BIN

@@ -16,13 +16,15 @@ include_directories (src  ${gatb-core-in

 file (GLOB_RECURSE  ProjectFiles  src/*)

 

 # we define the artifact to be built: the project binary

+include(GNUInstallDirs)

+LINK_DIRECTORIES( /usr/${CMAKE_INSTALL_LIBDIR}/hdf5/serial )

 add_executable        (${PROJECT_NAME}  ${ProjectFiles})

 

 set(EXECUTABLE_OUTPUT_PATH ${PROJECT_BINARY_DIRZ})

 

 

 # we define which libraries to be linked with project binary

-target_link_libraries (${PROJECT_NAME}  ${gatb-core-libraries})

+include(GNUInstallDirs)

+LINK_DIRECTORIES( /usr/${CMAKE_INSTALL_LIBDIR}/hdf5/serial )

+target_link_libraries (${PROJECT_NAME} gatbcore hdf5 )

+target_link_libraries (${PROJECT_NAME} gatbcore hdf5 z )

 

 

 # We copy the project binary to the 'bin' directory

--- a/tools/kissnp2/CMakeLists.txt

+++ b/tools/kissnp2/CMakeLists.txt

@@ -22,8 +22,10 @@ set(EXECUTABLE_OUTPUT_PATH ${PROJECT_BIN

@@ -16,14 +16,16 @@ include_directories (src  ${gatb-core-in

 file (GLOB_RECURSE  ProjectFiles  src/*)

 

 # we define the artifact to be built: the project binary

+include(GNUInstallDirs)

+LINK_DIRECTORIES( /usr/${CMAKE_INSTALL_LIBDIR}/hdf5/serial )

 add_executable        (${PROJECT_NAME}  ${ProjectFiles})

 

 set(EXECUTABLE_OUTPUT_PATH ${PROJECT_BINARY_DIRZ})

 

 

 # we define which libraries to be linked with project binary

-target_link_libraries (${PROJECT_NAME}  ${gatb-core-libraries})

+include(GNUInstallDirs)

+LINK_DIRECTORIES( /usr/${CMAKE_INSTALL_LIBDIR}/hdf5/serial )

+target_link_libraries (${PROJECT_NAME} gatbcore hdf5 )

+target_link_libraries (${PROJECT_NAME} gatbcore hdf5 z )

 

 

 # We copy the project binary to the 'bin' directory
@@ -46,14 +58,20 @@ Description: Use cmake input file of Debian packaged gatb-core 
+INSTALL (TARGETS ${PROJECT_NAME} DESTINATION bin)

--- a/tools/kissreads2/CMakeLists.txt

+++ b/tools/kissreads2/CMakeLists.txt

@@ -22,8 +22,10 @@ set(EXECUTABLE_OUTPUT_PATH ${PROJECT_BIN

@@ -16,14 +16,16 @@ include_directories (src  ${gatb-core-in

 file (GLOB_RECURSE  ProjectFiles  src/*)

 

 # we define the artifact to be built: the project binary

+include(GNUInstallDirs)

+LINK_DIRECTORIES( /usr/${CMAKE_INSTALL_LIBDIR}/hdf5/serial )

 add_executable        (${PROJECT_NAME}  ${ProjectFiles})

 

 set(EXECUTABLE_OUTPUT_PATH ${PROJECT_BINARY_DIRZ})

 

 

 # we define which libraries to be linked with project binary

-target_link_libraries (${PROJECT_NAME}  ${gatb-core-libraries})

+include(GNUInstallDirs)

+LINK_DIRECTORIES( /usr/${CMAKE_INSTALL_LIBDIR}/hdf5/serial )

+target_link_libraries (${PROJECT_NAME} gatbcore hdf5 )

+target_link_libraries (${PROJECT_NAME} gatbcore hdf5 z )

 

 

 # We copy the project binary to the 'bin' directory
@@ -62,14 +80,20 @@ Description: Use cmake input file of Debian packaged gatb-core 
+INSTALL (TARGETS ${PROJECT_NAME} DESTINATION bin)

--- a/tools/read_file_names/CMakeLists.txt

+++ b/tools/read_file_names/CMakeLists.txt

@@ -22,8 +22,10 @@ set(EXECUTABLE_OUTPUT_PATH ${PROJECT_BIN

@@ -16,14 +16,16 @@ include_directories (src  ${gatb-core-in

 file (GLOB_RECURSE  ProjectFiles  src/*)

 

 # we define the artifact to be built: the project binary

+include(GNUInstallDirs)

+LINK_DIRECTORIES( /usr/${CMAKE_INSTALL_LIBDIR}/hdf5/serial )

 add_executable        (${PROJECT_NAME}  ${ProjectFiles})

 

 set(EXECUTABLE_OUTPUT_PATH ${PROJECT_BINARY_DIRZ})

 

 

 # we define which libraries to be linked with project binary

-target_link_libraries (${PROJECT_NAME}  ${gatb-core-libraries})

+include(GNUInstallDirs)

+LINK_DIRECTORIES( /usr/${CMAKE_INSTALL_LIBDIR}/hdf5/serial )

+target_link_libraries (${PROJECT_NAME} gatbcore hdf5 )

+target_link_libraries (${PROJECT_NAME} gatbcore hdf5 z )

 

 

 # We copy the project binary to the 'bin' directory

debian/rules

+3 −0
Original line number Diff line number Diff line
@@ -8,3 +8,6 @@ include /usr/share/dpkg/default.mk 
%:

	dh $@

	dh_clean



override_dh_auto_configure:

	dh_auto_configure -- -DLINK_DIRECTORIES:STRING='/usr/$(DEB_HOST_MULTIARCH)/hdf5/serial' # --trace-expand