Commit b37f9f80 authored by Andreas Tille's avatar Andreas Tille
Browse files

New upstream version 1.0.1+dfsg

parent aec69875

VERSION

+1 −1
Original line number Diff line number Diff line 
0.8.0
 
1.0.0

src/ecopcr.c

+5 −8
Original line number Diff line number Diff line
@@ -6,7 +6,7 @@ 
#include <getopt.h>





#define VERSION "1.0.0"

#define VERSION "1.0.1"





/* ----------------------------------------------- */
@@ -615,8 +615,7 @@ int main(int argc, char **argv) 
										if (posj > posi)

											length = posj - posi - o1->patlen - o2->patlen;

										if (posj < posi)

											//length = posj + apatseq->seqlen - posi - o1->patlen - o2->patlen;   // TODO

											length = posi - posj - o1->patlen - o2->patlen;

											length = posj + apatseq->seqlen - posi - o1->patlen - o2->patlen;

										if ((length>0) &&	// For when primers touch or overlap

											(!lmin || (length >= lmin)) &&

											(!lmax || (length <= lmax)))
@@ -668,11 +667,9 @@ int main(int argc, char **argv) 


										length = 0;

										if (posj > posi)

											//length = posj - posi + 1  - o2->patlen - o1->patlen; /* - o1->patlen : deleted by <EC> (prior to the OBITools3) */ TODO ????

											length = posj - posi - o2->patlen - o1->patlen;

											length = posj - posi + 1  - o2->patlen - o1->patlen; /* - o1->patlen : deleted by <EC> (prior to the OBITools3) */

										if (posj < posi)

											//length = posj + apatseq->seqlen - posi - o1->patlen - o2->patlen; TODO ????

											length = posi - posj - o2->patlen - o1->patlen;

											length = posj + apatseq->seqlen - posi - o1->patlen - o2->patlen;

										if ((length>0) &&	// For when primers touch or overlap

											(!lmin || (length >= lmin)) &&

											(!lmax || (length <= lmax)))