New upstream version 4.9.0

# Prerequisites

*.d

# Compiled Object files

*.slo

*.lo

*.o

*.obj

# Precompiled Headers

*.gch

*.pch

# Compiled Dynamic libraries

*.so

*.dylib

*.dll

# Fortran module files

*.mod

*.smod

# Compiled Static libraries

*.lai

*.la

*.a

*.lib

# Executables

*.exe

*.out

*.app

# Generated files and

help/

cmake*

Makefile

CMakeFiles/

CTestTestfile.cmake

language: cpp

env:

  global:

    ELASTIX_SOURCE_DIR=${TRAVIS_BUILD_DIR}

    ELASTIX_BUILD_DIR=${HOME}/elastix-build

    ITK_URL=https://github.com/InsightSoftwareConsortium/ITK

    ITK_SOURCE_DIR=${HOME}/ITK-source

    ITK_BUILD_DIR=${HOME}/ITK-build

    OMP_NUM_THREADS=2

cache:

  directories:

    - ${ITK_SOURCE_DIR}

    - ${ITK_BUILD_DIR}

matrix:

  include:

    - os: linux

      dist: trusty

      sudo: required

      compiler: clang

    - os: linux

      dist: trusty

      sudo: required

      compiler: gcc

    - os: osx

      compiler: clang

    - os: osx

      compiler: gcc

before_script:

  - mkdir -p ${ELASTIX_BUILD_DIR}

script:

  - if [[ ! -e ${ITK_BUILD_DIR}/ITKConfig.cmake ]]; then

      rm -rf ${ITK_SOURCE_DIR} {ITK_BUILD_DIR} &&

      git clone ${ITK_URL} ${ITK_SOURCE_DIR} &&

      cd ${ITK_SOURCE_DIR} &&

      git checkout v4.11.1 &&

      mkdir -p ${ITK_BUILD_DIR} &&

      cd ${ITK_BUILD_DIR} &&

      cmake -DBUILD_EXAMPLES=OFF -DBUILD_TESTING:BOOL=OFF -DITK_BUILD_DEFAULT_MODULES:BOOL=OFF -DITKGroup_IO:BOOL=ON -DModule_ITKDistanceMap:BOOL=ON -DModule_ITKImageFusion:BOOL=ON -DModule_ITKLabelMap:BOOL:=ON -DModule_ITKMathematicalMorphology:BOOL=ON -DModule_ITKOptimizers:BOOL=ON -DModule_ITKOptimizersv4:BOOL=ON -DModule_ITKRegistrationCommon:BOOL=ON -DModule_ITKVideoIO:BOOL=ON-DCMAKE_BUILD_TYPE=Release ${ITK_SOURCE_DIR} &&

      make --jobs=4 && 

      touch ${HOME}/built_cache; fi

  - if [[ ! -e ${HOME}/built_cache ]]; then

      cd ${ELASTIX_BUILD_DIR} &&

      cmake -DELASTIX_USE_OPENMP=OFF -DITK_DIR=${ITK_BUILD_DIR} -DCMAKE_BUILD_TYPE=Release ${ELASTIX_SOURCE_DIR} &&

      make --jobs=4 && 

      ctest --jobs=4 --verbose; fi

function(elastix_export_target tgt)

  # Remove the build tree's ElastixTargets file if this is the first call:

  get_property(first_time GLOBAL PROPERTY ELASTIX_FIRST_EXPORTED_TARGET)

  if(NOT first_time)

    file(REMOVE ${CMAKE_BINARY_DIR}/ElastixTargets.cmake)

    set_property(GLOBAL PROPERTY ELASTIX_FIRST_EXPORTED_TARGET 1)

  endif()

  get_target_property( type ${tgt} TYPE )

  if (type STREQUAL "STATIC_LIBRARY" OR

      type STREQUAL "MODULE_LIBRARY" OR

      type STREQUAL "SHARED_LIBRARY")

    set_property(TARGET ${tgt} PROPERTY VERSION 1)

    set_property(TARGET ${tgt} PROPERTY SOVERSION 1)

    set_property(TARGET ${tgt} PROPERTY

      OUTPUT_NAME ${tgt}-${ELASTIX_VERSION_MAJOR}.${ELASTIX_VERSION_MINOR})

  endif()

  export(TARGETS ${tgt}

    APPEND FILE "${CMAKE_BINARY_DIR}/ElastixTargets.cmake"

  )

endfunction()

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