debian/patches/series

 doxygen_cleanup.patch
+static_libann.patch

debian/patches/static_libann.patch

+--- a/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/ann_1.1/CMakeLists.txt
++++ b/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/ann_1.1/CMakeLists.txt
+@@ -40,18 +40,4 @@
+ )
+ 
+ # Create the ANNlib library
+-add_library( ANNlib SHARED ${ANN_SRCS} )
+-
+-# Necessary when building a library, because in windows dll_export
+-# is needed for creating the dll, but dll_import for using it in a program.
+-set_target_properties( ANNlib PROPERTIES DEFINE_SYMBOL DLL_EXPORTS )
+-
+-# Group in IDE's like Visual Studio
+-set_property( TARGET ANNlib PROPERTY FOLDER "libraries" )
+-
+-# Install
+-install( TARGETS ANNlib
+-  ARCHIVE DESTINATION ${ELASTIX_ARCHIVE_DIR}
+-  LIBRARY DESTINATION ${ELASTIX_LIBRARY_DIR}
+-  RUNTIME DESTINATION ${ELASTIX_RUNTIME_DIR}
+-  COMPONENT RuntimeLibraries )
++add_library( ANNlib STATIC ${ANN_SRCS} )

dox/doxygen/DoxygenFooter.html.in

@@ -7,9 +7,21 @@
 <table width="100%">
 <tr><td>
 <small>Generated on @ELASTIX_DOXYGEN_DATE@ for elastix by <a href="http://www.doxygen.org/index.html"><img src="doxygen.png" alt="doxygen" align="middle" border=0 ></a> @ELASTIX_DOXYGEN_VERSION@ </small></td>
-<td style="text-align:right"><a class="logo2" href="http://elastix.isi.uu.nl/index.php"><img src="http://elastix.isi.uu.nl/images/elastixLogo.gif" alt="elastix logo" height="40"></a>
+<td style="text-align:right"><a class="logo2" href="../index.php"><img src="../images/elastixLogo.gif" alt="elastix logo" height="40"></a>
 </td></tr></table>
 
+<!-- Start of Google Analytics -->
+<script type="text/javascript">
+var gaJsHost = (("https:" == document.location.protocol) ? "https://ssl." : "http://www.");
+document.write(unescape("%3Cscript src='" + gaJsHost + "google-analytics.com/ga.js' type='text/javascript'%3E%3C/script%3E"));
+</script>
+<script type="text/javascript">
+var pageTracker = _gat._getTracker("UA-5189069-1");
+pageTracker._initData();
+pageTracker._trackPageview();
+</script>
+<!-- End of Google Analytics -->
+
 </body>
 </html>
 

dox/doxygen/DoxygenHeader.html

@@ -24,9 +24,9 @@ $extrastylesheet
 <div class="qindex">
 <table width="100%">
 <tr><td>
-<a class="logo1" href="http://elastix.isi.uu.nl/index.php"><img src="http://elastix.isi.uu.nl/images/elastixLogo.gif" alt="go home" height="40"></a></td>
+<a class="logo1" href="../index.php"><img src="../images/elastixLogo.gif" alt="go home" height="40"></a></td>
 <td style="text-align:center">
-  <a class="qindex" href="http://elastix.isi.uu.nl/index.php">Home</a> |
+  <a class="qindex" href="../index.php">Home</a> |
 <a class="qindex" href="index.html">Main&nbsp;Page</a> |
 <a class="qindex" href="modules.html">Modules</a> |
 <a class="qindex" href="namespaces.html">Namespace List</a> |
@@ -40,3 +40,17 @@ $extrastylesheet
 <a class="qindex" href="pages.html">Related&nbsp;Pages</a>
 </td></tr></table></div>
 
+<script>
+  (function() {
+    var cx = '014177235365818249935:2bt7h_7zxue';
+    var gcse = document.createElement('script');
+    gcse.type = 'text/javascript';
+    gcse.async = true;
+    gcse.src = (document.location.protocol == 'https:' ? 'https:' : 'http:') +
+        '//www.google.com/cse/cse.js?cx=' + cx;
+    var s = document.getElementsByTagName('script')[0];
+    s.parentNode.insertBefore(gcse, s);
+  })();
+</script>
+<gcse:search></gcse:search>
+

dox/doxygen/doxyfile.in

@@ -1189,7 +1189,7 @@ HTML_COLORSTYLE_GAMMA  = 80
 # The default value is: YES.
 # This tag requires that the tag GENERATE_HTML is set to YES.
 
-HTML_TIMESTAMP         = NO
+HTML_TIMESTAMP         = YES
 
 # If the HTML_DYNAMIC_SECTIONS tag is set to YES then the generated HTML
 # documentation will contain sections that can be hidden and shown after the
@@ -1197,7 +1197,7 @@ HTML_TIMESTAMP         = NO
 # The default value is: NO.
 # This tag requires that the tag GENERATE_HTML is set to YES.
 
-HTML_DYNAMIC_SECTIONS  = YES
+HTML_DYNAMIC_SECTIONS  = NO
 
 # With HTML_INDEX_NUM_ENTRIES one can control the preferred number of entries
 # shown in the various tree structured indices initially; the user can expand
@@ -1540,7 +1540,7 @@ MATHJAX_CODEFILE       =
 # The default value is: YES.
 # This tag requires that the tag GENERATE_HTML is set to YES.
 
-SEARCHENGINE           = YES
+SEARCHENGINE           = NO
 
 # When the SERVER_BASED_SEARCH tag is enabled the search engine will be
 # implemented using a web server instead of a web client using Javascript. There
@@ -2351,7 +2351,7 @@ DIRECTORY_GRAPH        = YES
 # The default value is: png.
 # This tag requires that the tag HAVE_DOT is set to YES.
 
-DOT_IMAGE_FORMAT       = svg
+DOT_IMAGE_FORMAT       = png
 
 # If DOT_IMAGE_FORMAT is set to svg, then this option can be set to YES to
 # enable generation of interactive SVG images that allow zooming and panning.
@@ -2363,7 +2363,7 @@ DOT_IMAGE_FORMAT       = svg
 # The default value is: NO.
 # This tag requires that the tag HAVE_DOT is set to YES.
 
-INTERACTIVE_SVG        = YES
+INTERACTIVE_SVG        = NO
 
 # The DOT_PATH tag can be used to specify the path where the dot tool can be
 # found. If left blank, it is assumed the dot tool can be found in the path.