Commit 0781725b authored by Charles Plessy's avatar Charles Plessy

Uploaded.

  * New upstream release in which the version number was unchanged.
  * Build-Depends on emboss 6.3.1 (debian/control, debian/rules).
  * Build-Depends on libmysqlclient-dev and libpq-dev until emboss is fixed.
  * Pass -Wl,--as-needed to avoid unneeded binary dependencies (debian/rules).
  * Incremented Standards-Version to reflect conformance with Policy 3.9.1
     (debian/control, no changes needed).
  * Refreshed manpages.
parent 731a7951
embassy-phylip (3.69+20100721-1) unstable; urgency=low
* New upstream release in which the version number was unchanged.
* Build-Depends on emboss 6.3.1 (debian/control, debian/rules).
* Build-Depends on libmysqlclient-dev and libpq-dev until emboss is fixed.
* Pass -Wl,--as-needed to avoid unneeded binary dependencies (debian/rules).
* Incremented Standards-Version to reflect conformance with Policy 3.9.1
(debian/control, no changes needed).
-- Charles Plessy <plessy@debian.org> Wed, 11 Aug 2010 19:46:37 +0900
embassy-phylip (3.69-1) unstable; urgency=low
* New upstream release.
......
......@@ -4,8 +4,18 @@ Priority: optional
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
DM-Upload-Allowed: yes
Uploaders: Charles Plessy <plessy@debian.org>
Build-Depends: cdbs, debhelper (>= 7), autotools-dev, libxaw7-dev, libnucleus6-dev, libajax6-dev, emboss-lib, libgd2-xpm-dev
Standards-Version: 3.8.4
Build-Depends:
cdbs,
debhelper (>= 7),
autotools-dev,
libxaw7-dev,
libnucleus6-dev (>= 6.3),
libajax6-dev (>= 6.3),
emboss-lib (>= 6.3),
libgd2-xpm-dev,
libmysqlclient-dev,
libpq-dev
Standards-Version: 3.9.1
Homepage: http://emboss.sourceforge.net/apps/cvs/embassy/index.html#PHYLIPNEW
Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/embassy-phylip/trunk/?rev=0&sc=0
Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/embassy-phylip/trunk
......
debian/manpages/fclique.1e
debian/manpages/fconsense.1e
debian/manpages/ffactor.1e
debian/manpages/fprotpars.1e
debian/manpages/ftreedistpair.1e
debian/manpages/fcontml.1e
debian/manpages/fcontrast.1e
debian/manpages/fdiscboot.1e
debian/manpages/fdnacomp.1e
debian/manpages/fdnadist.1e
debian/manpages/fdolmove.1e
debian/manpages/fcontrast.1e
debian/manpages/fmix.1e
debian/manpages/fdollop.1e
debian/manpages/fneighbor.1e
debian/manpages/fdnaml.1e
debian/manpages/fdrawgram.1e
debian/manpages/fdnainvar.1e
debian/manpages/fcontml.1e
debian/manpages/fdnaml.1e
debian/manpages/fdnamlk.1e
debian/manpages/fdnapenny.1e
debian/manpages/fpars.1e
debian/manpages/frestdist.1e
debian/manpages/fdnamove.1e
debian/manpages/fdnapars.1e
debian/manpages/fdnacomp.1e
debian/manpages/fdnapenny.1e
debian/manpages/fdollop.1e
debian/manpages/fdolmove.1e
debian/manpages/fdolpenny.1e
debian/manpages/fpromlk.1e
debian/manpages/fprotdist.1e
debian/manpages/fseqbootall.1e
debian/manpages/fseqboot.1e
debian/manpages/ffitch.1e
debian/manpages/fpenny.1e
debian/manpages/fdrawgram.1e
debian/manpages/fdrawtree.1e
debian/manpages/fretree.1e
debian/manpages/ffactor.1e
debian/manpages/ffitch.1e
debian/manpages/ffreqboot.1e
debian/manpages/fgendist.1e
debian/manpages/fkitsch.1e
debian/manpages/frestml.1e
debian/manpages/fproml.1e
debian/manpages/fmix.1e
debian/manpages/fmove.1e
debian/manpages/fdnamove.1e
debian/manpages/fneighbor.1e
debian/manpages/fpars.1e
debian/manpages/fpenny.1e
debian/manpages/fproml.1e
debian/manpages/fpromlk.1e
debian/manpages/fprotdist.1e
debian/manpages/fprotpars.1e
debian/manpages/frestboot.1e
debian/manpages/ffreqboot.1e
debian/manpages/frestdist.1e
debian/manpages/frestml.1e
debian/manpages/fretree.1e
debian/manpages/fseqboot.1e
debian/manpages/fseqbootall.1e
debian/manpages/ftreedist.1e
debian/manpages/fclique.1e
debian/manpages/fgendist.1e
debian/manpages/ftreedistpair.1e
......@@ -2,12 +2,12 @@
.\" Title: FCLIQUE
.\" Author: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
.\" Date: 06/01/2010
.\" Manual: EMBASSY Manual for Debian
.\" Source: PHYLIPNEW 3.69
.\" Date: 08/11/2010
.\" Manual: EMBOSS Manual for Debian
.\" Source: PHYLIPNEW 3.69+20100721
.\" Language: English
.\"
.TH "FCLIQUE" "1e" "06/01/2010" "PHYLIPNEW 3.69" "EMBASSY Manual for Debian"
.TH "FCLIQUE" "1e" "08/11/2010" "PHYLIPNEW 3.69+20100721" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * Define some portability stuff
.\" -----------------------------------------------------------------
......@@ -37,7 +37,7 @@ fclique \- Largest clique program
.SH "DESCRIPTION"
.PP
\fBfclique\fR
is a command line program for EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Phylogeny:Discrete characters" command group(s)\&.
is a command line program from EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Phylogeny:Discrete characters" command group(s)\&.
.SH "OPTIONS"
.SS "Input section"
.PP
......@@ -116,5 +116,5 @@ Wrote the script used to autogenerate this manual page\&.
.SH "COPYRIGHT"
.br
.PP
This manual page was autogenerated from an Ajax Control Definition of the EMBASSY PHYLIPNEW package\&. It can be redistributed under the same terms as EMBOSS itself\&.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package\&. It can be redistributed under the same terms as EMBOSS itself\&.
.sp
......@@ -2,12 +2,12 @@
.\" Title: FCONSENSE
.\" Author: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
.\" Date: 06/01/2010
.\" Manual: EMBASSY Manual for Debian
.\" Source: PHYLIPNEW 3.69
.\" Date: 08/11/2010
.\" Manual: EMBOSS Manual for Debian
.\" Source: PHYLIPNEW 3.69+20100721
.\" Language: English
.\"
.TH "FCONSENSE" "1e" "06/01/2010" "PHYLIPNEW 3.69" "EMBASSY Manual for Debian"
.TH "FCONSENSE" "1e" "08/11/2010" "PHYLIPNEW 3.69+20100721" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * Define some portability stuff
.\" -----------------------------------------------------------------
......@@ -37,7 +37,7 @@ fconsense \- Majority\-rule and strict consensus tree
.SH "DESCRIPTION"
.PP
\fBfconsense\fR
is a command line program for EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Phylogeny:Consensus" command group(s)\&.
is a command line program from EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Phylogeny:Consensus" command group(s)\&.
.SH "OPTIONS"
.SS "Input section"
.PP
......@@ -110,5 +110,5 @@ Wrote the script used to autogenerate this manual page\&.
.SH "COPYRIGHT"
.br
.PP
This manual page was autogenerated from an Ajax Control Definition of the EMBASSY PHYLIPNEW package\&. It can be redistributed under the same terms as EMBOSS itself\&.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package\&. It can be redistributed under the same terms as EMBOSS itself\&.
.sp
......@@ -2,12 +2,12 @@
.\" Title: FCONTML
.\" Author: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
.\" Date: 06/01/2010
.\" Manual: EMBASSY Manual for Debian
.\" Source: PHYLIPNEW 3.69
.\" Date: 08/11/2010
.\" Manual: EMBOSS Manual for Debian
.\" Source: PHYLIPNEW 3.69+20100721
.\" Language: English
.\"
.TH "FCONTML" "1e" "06/01/2010" "PHYLIPNEW 3.69" "EMBASSY Manual for Debian"
.TH "FCONTML" "1e" "08/11/2010" "PHYLIPNEW 3.69+20100721" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * Define some portability stuff
.\" -----------------------------------------------------------------
......@@ -37,7 +37,7 @@ fcontml \- Gene frequency and continuous character Maximum Likelihood
.SH "DESCRIPTION"
.PP
\fBfcontml\fR
is a command line program for EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Phylogeny:Gene frequencies" command group(s)\&.
is a command line program from EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Phylogeny:Gene frequencies" command group(s)\&.
.SH "OPTIONS"
.SS "Input section"
.PP
......@@ -124,5 +124,5 @@ Wrote the script used to autogenerate this manual page\&.
.SH "COPYRIGHT"
.br
.PP
This manual page was autogenerated from an Ajax Control Definition of the EMBASSY PHYLIPNEW package\&. It can be redistributed under the same terms as EMBOSS itself\&.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package\&. It can be redistributed under the same terms as EMBOSS itself\&.
.sp
......@@ -2,12 +2,12 @@
.\" Title: FCONTRAST
.\" Author: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
.\" Date: 06/01/2010
.\" Manual: EMBASSY Manual for Debian
.\" Source: PHYLIPNEW 3.69
.\" Date: 08/11/2010
.\" Manual: EMBOSS Manual for Debian
.\" Source: PHYLIPNEW 3.69+20100721
.\" Language: English
.\"
.TH "FCONTRAST" "1e" "06/01/2010" "PHYLIPNEW 3.69" "EMBASSY Manual for Debian"
.TH "FCONTRAST" "1e" "08/11/2010" "PHYLIPNEW 3.69+20100721" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * Define some portability stuff
.\" -----------------------------------------------------------------
......@@ -37,7 +37,7 @@ fcontrast \- Continuous character Contrasts
.SH "DESCRIPTION"
.PP
\fBfcontrast\fR
is a command line program for EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Phylogeny:Continuous characters" command group(s)\&.
is a command line program from EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Phylogeny:Continuous characters" command group(s)\&.
.SH "OPTIONS"
.SS "Input section"
.PP
......@@ -102,5 +102,5 @@ Wrote the script used to autogenerate this manual page\&.
.SH "COPYRIGHT"
.br
.PP
This manual page was autogenerated from an Ajax Control Definition of the EMBASSY PHYLIPNEW package\&. It can be redistributed under the same terms as EMBOSS itself\&.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package\&. It can be redistributed under the same terms as EMBOSS itself\&.
.sp
......@@ -2,12 +2,12 @@
.\" Title: FDISCBOOT
.\" Author: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
.\" Date: 06/01/2010
.\" Manual: EMBASSY Manual for Debian
.\" Source: PHYLIPNEW 3.69
.\" Date: 08/11/2010
.\" Manual: EMBOSS Manual for Debian
.\" Source: PHYLIPNEW 3.69+20100721
.\" Language: English
.\"
.TH "FDISCBOOT" "1e" "06/01/2010" "PHYLIPNEW 3.69" "EMBASSY Manual for Debian"
.TH "FDISCBOOT" "1e" "08/11/2010" "PHYLIPNEW 3.69+20100721" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * Define some portability stuff
.\" -----------------------------------------------------------------
......@@ -37,7 +37,7 @@ fdiscboot \- Bootstrapped discrete sites algorithm
.SH "DESCRIPTION"
.PP
\fBfdiscboot\fR
is a command line program for EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Phylogeny:Molecular sequence" command group(s)\&.
is a command line program from EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Phylogeny:Molecular sequence" command group(s)\&.
.SH "OPTIONS"
.SS "Input section"
.PP
......@@ -151,5 +151,5 @@ Wrote the script used to autogenerate this manual page\&.
.SH "COPYRIGHT"
.br
.PP
This manual page was autogenerated from an Ajax Control Definition of the EMBASSY PHYLIPNEW package\&. It can be redistributed under the same terms as EMBOSS itself\&.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package\&. It can be redistributed under the same terms as EMBOSS itself\&.
.sp
......@@ -2,12 +2,12 @@
.\" Title: FDNACOMP
.\" Author: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
.\" Date: 06/01/2010
.\" Manual: EMBASSY Manual for Debian
.\" Source: PHYLIPNEW 3.69
.\" Date: 08/11/2010
.\" Manual: EMBOSS Manual for Debian
.\" Source: PHYLIPNEW 3.69+20100721
.\" Language: English
.\"
.TH "FDNACOMP" "1e" "06/01/2010" "PHYLIPNEW 3.69" "EMBASSY Manual for Debian"
.TH "FDNACOMP" "1e" "08/11/2010" "PHYLIPNEW 3.69+20100721" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * Define some portability stuff
.\" -----------------------------------------------------------------
......@@ -37,7 +37,7 @@ fdnacomp \- DNA compatibility algorithm
.SH "DESCRIPTION"
.PP
\fBfdnacomp\fR
is a command line program for EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Phylogeny:Molecular sequence" command group(s)\&.
is a command line program from EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Phylogeny:Molecular sequence" command group(s)\&.
.SH "OPTIONS"
.SS "Input section"
.PP
......@@ -123,5 +123,5 @@ Wrote the script used to autogenerate this manual page\&.
.SH "COPYRIGHT"
.br
.PP
This manual page was autogenerated from an Ajax Control Definition of the EMBASSY PHYLIPNEW package\&. It can be redistributed under the same terms as EMBOSS itself\&.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package\&. It can be redistributed under the same terms as EMBOSS itself\&.
.sp
......@@ -2,12 +2,12 @@
.\" Title: FDNADIST
.\" Author: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
.\" Date: 06/01/2010
.\" Manual: EMBASSY Manual for Debian
.\" Source: PHYLIPNEW 3.69
.\" Date: 08/11/2010
.\" Manual: EMBOSS Manual for Debian
.\" Source: PHYLIPNEW 3.69+20100721
.\" Language: English
.\"
.TH "FDNADIST" "1e" "06/01/2010" "PHYLIPNEW 3.69" "EMBASSY Manual for Debian"
.TH "FDNADIST" "1e" "08/11/2010" "PHYLIPNEW 3.69+20100721" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * Define some portability stuff
.\" -----------------------------------------------------------------
......@@ -37,7 +37,7 @@ fdnadist \- Nucleic acid sequence Distance Matrix program
.SH "DESCRIPTION"
.PP
\fBfdnadist\fR
is a command line program for EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Phylogeny:Molecular sequence" command group(s)\&.
is a command line program from EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Phylogeny:Molecular sequence" command group(s)\&.
.SH "OPTIONS"
.SS "Input section"
.PP
......@@ -142,5 +142,5 @@ Wrote the script used to autogenerate this manual page\&.
.SH "COPYRIGHT"
.br
.PP
This manual page was autogenerated from an Ajax Control Definition of the EMBASSY PHYLIPNEW package\&. It can be redistributed under the same terms as EMBOSS itself\&.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package\&. It can be redistributed under the same terms as EMBOSS itself\&.
.sp
......@@ -2,12 +2,12 @@
.\" Title: FDNAINVAR
.\" Author: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
.\" Date: 06/01/2010
.\" Manual: EMBASSY Manual for Debian
.\" Source: PHYLIPNEW 3.69
.\" Date: 08/11/2010
.\" Manual: EMBOSS Manual for Debian
.\" Source: PHYLIPNEW 3.69+20100721
.\" Language: English
.\"
.TH "FDNAINVAR" "1e" "06/01/2010" "PHYLIPNEW 3.69" "EMBASSY Manual for Debian"
.TH "FDNAINVAR" "1e" "08/11/2010" "PHYLIPNEW 3.69+20100721" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * Define some portability stuff
.\" -----------------------------------------------------------------
......@@ -37,7 +37,7 @@ fdnainvar \- Nucleic acid sequence Invariants method
.SH "DESCRIPTION"
.PP
\fBfdnainvar\fR
is a command line program for EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Phylogeny:Molecular sequence" command group(s)\&.
is a command line program from EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Phylogeny:Molecular sequence" command group(s)\&.
.SH "OPTIONS"
.SS "Input section"
.PP
......@@ -96,5 +96,5 @@ Wrote the script used to autogenerate this manual page\&.
.SH "COPYRIGHT"
.br
.PP
This manual page was autogenerated from an Ajax Control Definition of the EMBASSY PHYLIPNEW package\&. It can be redistributed under the same terms as EMBOSS itself\&.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package\&. It can be redistributed under the same terms as EMBOSS itself\&.
.sp
......@@ -2,12 +2,12 @@
.\" Title: FDNAML
.\" Author: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
.\" Date: 06/01/2010
.\" Manual: EMBASSY Manual for Debian
.\" Source: PHYLIPNEW 3.69
.\" Date: 08/11/2010
.\" Manual: EMBOSS Manual for Debian
.\" Source: PHYLIPNEW 3.69+20100721
.\" Language: English
.\"
.TH "FDNAML" "1e" "06/01/2010" "PHYLIPNEW 3.69" "EMBASSY Manual for Debian"
.TH "FDNAML" "1e" "08/11/2010" "PHYLIPNEW 3.69+20100721" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * Define some portability stuff
.\" -----------------------------------------------------------------
......@@ -37,7 +37,7 @@ fdnaml \- Estimates nucleotide phylogeny by maximum likelihood
.SH "DESCRIPTION"
.PP
\fBfdnaml\fR
is a command line program for EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Phylogeny:Molecular sequence" command group(s)\&.
is a command line program from EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Phylogeny:Molecular sequence" command group(s)\&.
.SH "OPTIONS"
.SS "Input section"
.PP
......@@ -217,5 +217,5 @@ Wrote the script used to autogenerate this manual page\&.
.SH "COPYRIGHT"
.br
.PP
This manual page was autogenerated from an Ajax Control Definition of the EMBASSY PHYLIPNEW package\&. It can be redistributed under the same terms as EMBOSS itself\&.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package\&. It can be redistributed under the same terms as EMBOSS itself\&.
.sp
......@@ -2,12 +2,12 @@
.\" Title: FDNAMLK
.\" Author: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
.\" Date: 06/01/2010
.\" Manual: EMBASSY Manual for Debian
.\" Source: PHYLIPNEW 3.69
.\" Date: 08/11/2010
.\" Manual: EMBOSS Manual for Debian
.\" Source: PHYLIPNEW 3.69+20100721
.\" Language: English
.\"
.TH "FDNAMLK" "1e" "06/01/2010" "PHYLIPNEW 3.69" "EMBASSY Manual for Debian"
.TH "FDNAMLK" "1e" "08/11/2010" "PHYLIPNEW 3.69+20100721" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * Define some portability stuff
.\" -----------------------------------------------------------------
......@@ -37,7 +37,7 @@ fdnamlk \- Estimates nucleotide phylogeny by maximum likelihood
.SH "DESCRIPTION"
.PP
\fBfdnamlk\fR
is a command line program for EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Phylogeny:Molecular sequence" command group(s)\&.
is a command line program from EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Phylogeny:Molecular sequence" command group(s)\&.
.SH "OPTIONS"
.SS "Input section"
.PP
......@@ -207,5 +207,5 @@ Wrote the script used to autogenerate this manual page\&.
.SH "COPYRIGHT"
.br
.PP
This manual page was autogenerated from an Ajax Control Definition of the EMBASSY PHYLIPNEW package\&. It can be redistributed under the same terms as EMBOSS itself\&.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package\&. It can be redistributed under the same terms as EMBOSS itself\&.
.sp
......@@ -2,12 +2,12 @@
.\" Title: FDNAMOVE
.\" Author: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
.\" Date: 06/01/2010
.\" Manual: EMBASSY Manual for Debian
.\" Source: PHYLIPNEW 3.69
.\" Date: 08/11/2010
.\" Manual: EMBOSS Manual for Debian
.\" Source: PHYLIPNEW 3.69+20100721
.\" Language: English
.\"
.TH "FDNAMOVE" "1e" "06/01/2010" "PHYLIPNEW 3.69" "EMBASSY Manual for Debian"
.TH "FDNAMOVE" "1e" "08/11/2010" "PHYLIPNEW 3.69+20100721" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * Define some portability stuff
.\" -----------------------------------------------------------------
......@@ -37,7 +37,7 @@ fdnamove \- Interactive DNA parsimony
.SH "DESCRIPTION"
.PP
\fBfdnamove\fR
is a command line program for EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Phylogeny:Molecular sequence" command group(s)\&.
is a command line program from EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Phylogeny:Molecular sequence" command group(s)\&.
.SH "OPTIONS"
.SS "Input section"
.PP
......@@ -105,5 +105,5 @@ Wrote the script used to autogenerate this manual page\&.
.SH "COPYRIGHT"
.br
.PP
This manual page was autogenerated from an Ajax Control Definition of the EMBASSY PHYLIPNEW package\&. It can be redistributed under the same terms as EMBOSS itself\&.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package\&. It can be redistributed under the same terms as EMBOSS itself\&.
.sp
......@@ -2,12 +2,12 @@
.\" Title: FDNAPARS
.\" Author: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
.\" Date: 06/01/2010
.\" Manual: EMBASSY Manual for Debian
.\" Source: PHYLIPNEW 3.69
.\" Date: 08/11/2010
.\" Manual: EMBOSS Manual for Debian
.\" Source: PHYLIPNEW 3.69+20100721
.\" Language: English
.\"
.TH "FDNAPARS" "1e" "06/01/2010" "PHYLIPNEW 3.69" "EMBASSY Manual for Debian"
.TH "FDNAPARS" "1e" "08/11/2010" "PHYLIPNEW 3.69+20100721" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * Define some portability stuff
.\" -----------------------------------------------------------------
......@@ -37,7 +37,7 @@ fdnapars \- DNA parsimony algorithm
.SH "DESCRIPTION"
.PP
\fBfdnapars\fR
is a command line program for EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Phylogeny:Molecular sequence" command group(s)\&.
is a command line program from EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Phylogeny:Molecular sequence" command group(s)\&.
.SH "OPTIONS"
.SS "Input section"
.PP
......@@ -158,5 +158,5 @@ Wrote the script used to autogenerate this manual page\&.
.SH "COPYRIGHT"
.br
.PP
This manual page was autogenerated from an Ajax Control Definition of the EMBASSY PHYLIPNEW package\&. It can be redistributed under the same terms as EMBOSS itself\&.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package\&. It can be redistributed under the same terms as EMBOSS itself\&.
.sp
......@@ -2,12 +2,12 @@
.\" Title: FDNAPENNY
.\" Author: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
.\" Date: 06/01/2010
.\" Manual: EMBASSY Manual for Debian
.\" Source: PHYLIPNEW 3.69
.\" Date: 08/11/2010
.\" Manual: EMBOSS Manual for Debian
.\" Source: PHYLIPNEW 3.69+20100721
.\" Language: English
.\"
.TH "FDNAPENNY" "1e" "06/01/2010" "PHYLIPNEW 3.69" "EMBASSY Manual for Debian"
.TH "FDNAPENNY" "1e" "08/11/2010" "PHYLIPNEW 3.69+20100721" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * Define some portability stuff
.\" -----------------------------------------------------------------
......@@ -37,7 +37,7 @@ fdnapenny \- Penny algorithm for DNA
.SH "DESCRIPTION"
.PP
\fBfdnapenny\fR
is a command line program for EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Phylogeny:Molecular sequence" command group(s)\&.
is a command line program from EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Phylogeny:Molecular sequence" command group(s)\&.
.SH "OPTIONS"
.SS "Input section"
.PP
......@@ -135,5 +135,5 @@ Wrote the script used to autogenerate this manual page\&.
.SH "COPYRIGHT"
.br
.PP
This manual page was autogenerated from an Ajax Control Definition of the EMBASSY PHYLIPNEW package\&. It can be redistributed under the same terms as EMBOSS itself\&.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package\&. It can be redistributed under the same terms as EMBOSS itself\&.
.sp
......@@ -2,12 +2,12 @@
.\" Title: FDOLLOP
.\" Author: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
.\" Date: 06/01/2010
.\" Manual: EMBASSY Manual for Debian
.\" Source: PHYLIPNEW 3.69
.\" Date: 08/11/2010
.\" Manual: EMBOSS Manual for Debian
.\" Source: PHYLIPNEW 3.69+20100721
.\" Language: English
.\"
.TH "FDOLLOP" "1e" "06/01/2010" "PHYLIPNEW 3.69" "EMBASSY Manual for Debian"
.TH "FDOLLOP" "1e" "08/11/2010" "PHYLIPNEW 3.69+20100721" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * Define some portability stuff
.\" -----------------------------------------------------------------
......@@ -37,7 +37,7 @@ fdollop \- Dollo and polymorphism parsimony algorithm
.SH "DESCRIPTION"
.PP
\fBfdollop\fR
is a command line program for EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Phylogeny:Discrete characters" command group(s)\&.
is a command line program from EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Phylogeny:Discrete characters" command group(s)\&.
.SH "OPTIONS"
.SS "Input section"
.PP
......@@ -133,5 +133,5 @@ Wrote the script used to autogenerate this manual page\&.
.SH "COPYRIGHT"
.br
.PP
This manual page was autogenerated from an Ajax Control Definition of the EMBASSY PHYLIPNEW package\&. It can be redistributed under the same terms as EMBOSS itself\&.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package\&. It can be redistributed under the same terms as EMBOSS itself\&.
.sp
......@@ -2,12 +2,12 @@
.\" Title: FDOLMOVE
.\" Author: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
.\" Date: 06/01/2010
.\" Manual: EMBASSY Manual for Debian
.\" Source: PHYLIPNEW 3.69
.\" Date: 08/11/2010
.\" Manual: EMBOSS Manual for Debian
.\" Source: PHYLIPNEW 3.69+20100721
.\" Language: English
.\"
.TH "FDOLMOVE" "1e" "06/01/2010" "PHYLIPNEW 3.69" "EMBASSY Manual for Debian"
.TH "FDOLMOVE" "1e" "08/11/2010" "PHYLIPNEW 3.69+20100721" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * Define some portability stuff
.\" -----------------------------------------------------------------
......@@ -37,7 +37,7 @@ fdolmove \- Interactive Dollo or Polymorphism Parsimony
.SH "DESCRIPTION"
.PP
\fBfdolmove\fR
is a command line program for EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Phylogeny:Molecular sequence" command group(s)\&.
is a command line program from EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Phylogeny:Molecular sequence" command group(s)\&.
.SH "OPTIONS"
.SS "Input section"
.PP
......@@ -115,5 +115,5 @@ Wrote the script used to autogenerate this manual page\&.
.SH "COPYRIGHT"
.br
.PP
This manual page was autogenerated from an Ajax Control Definition of the EMBASSY PHYLIPNEW package\&. It can be redistributed under the same terms as EMBOSS itself\&.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package\&. It can be redistributed under the same terms as EMBOSS itself\&.
.sp
......@@ -2,12 +2,12 @@
.\" Title: FDOLPENNY
.\" Author: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
.\" Date: 06/01/2010
.\" Manual: EMBASSY Manual for Debian
.\" Source: PHYLIPNEW 3.69
.\" Date: 08/11/2010
.\" Manual: EMBOSS Manual for Debian
.\" Source: PHYLIPNEW 3.69+20100721
.\" Language: English
.\"
.TH "FDOLPENNY" "1e" "06/01/2010" "PHYLIPNEW 3.69" "EMBASSY Manual for Debian"
.TH "FDOLPENNY" "1e" "08/11/2010" "PHYLIPNEW 3.69+20100721" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * Define some portability stuff
.\" -----------------------------------------------------------------
......@@ -37,7 +37,7 @@ fdolpenny \- Penny algorithm Dollo or polymorphism
.SH "DESCRIPTION"
.PP
\fBfdolpenny\fR
is a command line program for EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Phylogeny:Discrete characters" command group(s)\&.
is a command line program from EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Phylogeny:Discrete characters" command group(s)\&.
.SH "OPTIONS"
.SS "Input section"
.PP
......@@ -140,5 +140,5 @@ Wrote the script used to autogenerate this manual page\&.
.SH "COPYRIGHT"
.br
.PP
This manual page was autogenerated from an Ajax Control Definition of the EMBASSY PHYLIPNEW package\&. It can be redistributed under the same terms as EMBOSS itself\&.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package\&. It can be redistributed under the same terms as EMBOSS itself\&.
.sp
......@@ -2,12 +2,12 @@
.\" Title: FDRAWGRAM
.\" Author: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
.\" Date: 06/01/2010
.\" Manual: EMBASSY Manual for Debian
.\" Source: PHYLIPNEW 3.69
.\" Date: 08/11/2010
.\" Manual: EMBOSS Manual for Debian
.\" Source: PHYLIPNEW 3.69+20100721
.\" Language: English
.\"
.TH "FDRAWGRAM" "1e" "06/01/2010" "PHYLIPNEW 3.69" "EMBASSY Manual for Debian"
.TH "FDRAWGRAM" "1e" "08/11/2010" "PHYLIPNEW 3.69+20100721" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * Define some portability stuff
.\" -----------------------------------------------------------------
......@@ -37,7 +37,7 @@ fdrawgram \- Plots a cladogram\- or phenogram\-like rooted tree diagram
.SH "DESCRIPTION"
.PP
\fBfdrawgram\fR
is a command line program for EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Phylogeny:Tree drawing" command group(s)\&.
is a command line program from EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Phylogeny:Tree drawing" command group(s)\&.
.SH "OPTIONS"
.SS "Input section"
.PP
......@@ -182,5 +182,5 @@ Wrote the script used to autogenerate this manual page\&.
.SH "COPYRIGHT"
.br
.PP
This manual page was autogenerated from an Ajax Control Definition of the EMBASSY PHYLIPNEW package\&. It can be redistributed under the same terms as EMBOSS itself\&.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package\&. It can be redistributed under the same terms as EMBOSS itself\&.
.sp
......@@ -2,12 +2,12 @@
.\" Title: FDRAWTREE
.\" Author: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
.\" Date: 06/01/2010
.\" Manual: EMBASSY Manual for Debian
.\" Source: PHYLIPNEW 3.69
.\" Date: 08/11/2010
.\" Manual: EMBOSS Manual for Debian
.\" Source: PHYLIPNEW 3.69+20100721
.\" Language: English
.\"
.TH "FDRAWTREE" "1e" "06/01/2010" "PHYLIPNEW 3.69" "EMBASSY Manual for Debian"
.TH "FDRAWTREE" "1e" "08/11/2010" "PHYLIPNEW 3.69+20100721" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * Define some portability stuff
.\" -----------------------------------------------------------------
......@@ -37,7 +37,7 @@ fdrawtree \- Plots an unrooted tree diagram
.SH "DESCRIPTION"
.PP
\fBfdrawtree\fR
is a command line program for EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Phylogeny:Tree drawing" command group(s)\&.
is a command line program from EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Phylogeny:Tree drawing" command group(s)\&.
.SH "OPTIONS"
.SS "Input section"
.PP
......@@ -177,5 +177,5 @@ Wrote the script used to autogenerate this manual page\&.
.SH "COPYRIGHT"
.br
.PP
This manual page was autogenerated from an Ajax Control Definition of the EMBASSY PHYLIPNEW package\&. It can be redistributed under the same terms as EMBOSS itself\&.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package\&. It can be redistributed under the same terms as EMBOSS itself\&.
.sp
......@@ -2,12 +2,12 @@
.\" Title: FFACTOR
.\" Author: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
.\" Date: 06/01/2010
.\" Manual: EMBASSY Manual for Debian
.\" Source: PHYLIPNEW 3.69
.\" Date: 08/11/2010
.\" Manual: EMBOSS Manual for Debian
.\" Source: PHYLIPNEW 3.69+20100721
.\" Language: English
.\"
.TH "FFACTOR" "1e" "06/01/2010" "PHYLIPNEW 3.69" "EMBASSY Manual for Debian"
.TH "FFACTOR" "1e" "08/11/2010" "PHYLIPNEW 3.69+20100721" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * Define some portability stuff
.\" -----------------------------------------------------------------
......@@ -37,7 +37,7 @@ ffactor \- Multistate to binary recoding program
.SH "DESCRIPTION"
.PP
\fBffactor\fR
is a command line program for EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Phylogeny:Discrete characters" command group(s)\&.
is a command line program from EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Phylogeny:Discrete characters" command group(s)\&.
.SH "OPTIONS"
.SS "Input section"
.PP
......@@ -90,5 +90,5 @@ Wrote the script used to autogenerate this manual page\&.
.SH "COPYRIGHT"
.br
.PP
This manual page was autogenerated from an Ajax Control Definition of the EMBASSY PHYLIPNEW package\&. It can be redistributed under the same terms as EMBOSS itself\&.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package\&. It can be redistributed under the same terms as EMBOSS itself\&.
.sp
......@@ -2,12 +2,12 @@
.\" Title: FFITCH
.\" Author: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
.\" Date: 06/01/2010
.\" Manual: EMBASSY Manual for Debian
.\" Source: PHYLIPNEW 3.69
.\" Date: 08/11/2010
.\" Manual: EMBOSS Manual for Debian
.\" Source: PHYLIPNEW 3.69+20100721
.\" Language: English
.\"
.TH "FFITCH" "1e" "06/01/2010" "PHYLIPNEW 3.69" "EMBASSY Manual for Debian"
.TH "FFITCH" "1e" "08/11/2010" "PHYLIPNEW 3.69+20100721" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * Define some portability stuff
.\" -----------------------------------------------------------------
......@@ -37,7 +37,7 @@ ffitch \- Fitch\-Margoliash and Least\-Squares Distance Methods
.SH "DESCRIPTION"
.PP
\fBffitch\fR
is a command line program for EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Phylogeny:Distance matrix" command group(s)\&.
is a command line program from EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Phylogeny:Distance matrix" command group(s)\&.
.SH "OPTIONS"
.SS "Input section"
.PP
......@@ -144,5 +144,5 @@ Wrote the script used to autogenerate this manual page\&.
.SH "COPYRIGHT"
.br
.PP
This manual page was autogenerated from an Ajax Control Definition of the EMBASSY PHYLIPNEW package\&. It can be redistributed under the same terms as EMBOSS itself\&.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package\&. It can be redistributed under the same terms as EMBOSS itself\&.
.sp
......@@ -2,12 +2,12 @@
.\" Title: FFREQBOOT
.\" Author: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
.\" Date: 06/01/2010
.\" Manual: EMBASSY Manual for Debian
.\" Source: PHYLIPNEW 3.69
.\" Date: 08/11/2010
.\" Manual: EMBOSS Manual for Debian
.\" Source: PHYLIPNEW 3.69+20100721
.\" Language: English
.\"
.TH "FFREQBOOT" "1e" "06/01/2010" "PHYLIPNEW 3.69" "EMBASSY Manual for Debian"