Commit 1656bb9c authored by Saira Hussain's avatar Saira Hussain 💬
Browse files

Rename gingo to the proper scientific name gingko

parent 8a6db605

debian/tests/fetch_test_data.py

+1 −1
Original line number Diff line number Diff line
@@ -6,7 +6,7 @@ from Bio import Entrez 


Entrez.email = 'unknown@debian.org'

database = 'nucleotide'

fn = 'data/gingo.fasta'

fn = 'data/gingko.fasta'



query = [

    '((chloroplast OR plastid) AND "complete genome" AND Embryophyta NOT (mi- tochondrion OR mitochondrial)) AND "Ginkgo biloba"'

debian/tests/run-unit-test

+4 −1
Original line number Diff line number Diff line
@@ -16,4 +16,7 @@ cd "${AUTOPKGTEST_TMP}" 
gunzip -r *



set -x

re-PCR -S ginko.hash -n 5 -g 0 -d 100-300 -o rbcL5.rePCR rbcL-primer.txt
 


famap -b gingko.mmap -t N gingko.fasta

fahash -b gingko.hash -w 3 -f 2 gingko.mmap

re-PCR -S gingko.hash -n 5 -g 0 -d 100-300 -o rbcL5.rePCR rbcL-primer.txt