debian/changelog

-epcr (2.3.12-1-6.1) UNRELEASED; urgency=medium
+epcr (2.3.12-1-6) unstable; urgency=medium
 
   [ Andreas Tille ]
   * debian/upstream/metadata
@@ -10,7 +10,12 @@ epcr (2.3.12-1-6.1) UNRELEASED; urgency=medium
   * Debhelper bumped
   * Standard version updated 
 
- -- Manas Kashyap <manaskashyaptech@gmail.com>  Tue, 02 Oct 2018 14:53:57 +0000
+  [ Andreas Tille ]
+  * Versioned Build-Depends: debhelper (>= 11~) to enable easy backports
+  * Fix spelling
+  * Do not parse d/changelog
+
+ -- Andreas Tille <tille@debian.org>  Sun, 14 Oct 2018 00:23:48 +0200
 
 epcr (2.3.12-1-5) unstable; urgency=medium
 

debian/control

@@ -5,7 +5,7 @@ Uploaders: Steffen Moeller <moeller@debian.org>,
            Charles Plessy <plessy@debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 11)
+Build-Depends: debhelper (>= 11~)
 Standards-Version: 4.2.1
 Vcs-Browser: https://salsa.debian.org/med-team/epcr
 Vcs-Git: https://salsa.debian.org/med-team/epcr.git

debian/patches/series

@@ -3,3 +3,4 @@ fix_header_location.patch
 ensure_build_options.patch
 use-dpkg-buildflags.patch
 mayhem.patch
+spelling.patch

debian/patches/spelling.patch

+Description: Fix spelling
+Author: Andreas Tille <tille@debian.org>
+Last-Update: Sat, 13 Oct 2018 23:57:40 +0200
+
+--- a/README.txt
++++ b/README.txt
+@@ -37,7 +37,7 @@ where posix-options are:
+         -p +-   Turn hits postprocess on/off
+         -v +-   Verbose on/Off
+         -a a|f  Use presize alignmens (only if gaps>0), slow
+-                 a - Allways or f - as Fallback
++                 a - Always or f - as Fallback
+         -x +-   Use 5'-end lowercase masking of primers (default -)
+         -u +-   Uppercase all primers (default -)
+ and compat-options (duplicate posix-options) are:
+@@ -52,7 +52,7 @@ and compat-options (duplicate posix-opti
+         P=+-    Postprocess hits on/off
+         V=+-    Verbose on/Off
+         A=a|f   Use presize alignmens (only if gaps>0), slow
+-                 a - Allways or f - as Fallback
++                 a - Always or f - as Fallback
+         X=+-    Use 5'-end lowercase masking of primers (default -)
+         U=+-    Uppercase all primers (default -)
+         -mid    Same as T=2
+--- a/e-PCR_main.cpp
++++ b/e-PCR_main.cpp
+@@ -126,7 +126,7 @@ int CMain::Help(FILE* out)
+ 	fprintf(out,"\t-p +-\tTurn hits postprocess on/off\n");
+     fprintf(out,"\t-v ##\tVerbosity flags\n");
+     fprintf(out,"\t-a a|f\tUse presize alignmens (only if gaps>0), slow\n"
+-            "\t\t a - Allways or f - as Fallback\n");
++            "\t\t a - Always or f - as Fallback\n");
+     fprintf(out,"\t-x +-\tUse 5'-end lowercase masking of primers "
+             "(default %s)\n",stsFileHash.AllowOverhang()?"+":"-");
+     fprintf(out,"\t-u +-\tUppercase all primers "
+@@ -149,7 +149,7 @@ int CMain::Help(FILE* out)
+ 	fprintf(out,"\tP=+-\tPostprocess hits on/off\n");
+ 	fprintf(out,"\tV=##\tVerbosity flags\n");
+     fprintf(out,"\tA=a|f\tUse presize alignmens (only if gaps>0), slow\n"
+-            "\t\t a - Allways or f - as Fallback\n");
++            "\t\t a - Always or f - as Fallback\n");
+     fprintf(out,"\tX=+-\tUse 5'-end lowercase masking of primers "
+             "(default %s)\n",stsFileHash.AllowOverhang()?"+":"-");
+     fprintf(out,"\tU=+-\tUppercase all primers "
+--- a/famap_main.cpp
++++ b/famap_main.cpp
+@@ -75,7 +75,7 @@ int CMain::Help(FILE* out)
+ 	fprintf(out,"usage: [-hV] -b mmapped-file [-t cvt] [fafile ...]\n");
+ 	fprintf(out,"   or: [-hV] -d mmapped-file [ord ...]\n");
+ 	fprintf(out,"   or: [-hV] -l mmapped-file [ord ...]\n");
+-	fprintf(out,"where cvt (convertion table) is one of:\n"
++	fprintf(out,"where cvt (conversion table) is one of:\n"
+ 			"\toff - as is (default)\n"
+ 			"\tn   - nucleotide [acgtnACGTN] allowed,\n"
+ 			"\tN   - nucleotide uppercase allowed [ACGTN]\n"

debian/rules

@@ -4,12 +4,13 @@
 
 export DEB_BUILD_MAINT_OPTIONS = hardening=+all
 
-VERSION := $(shell dpkg-parsechangelog | sed -ne 's/^Version: \(\([0-9]\+\):\)\?\(.*\)-.*/\3/p')
-VER_MAJOR := $(shell echo $(VERSION) | sed 's/^\([0-9]\+\)\..*/\1/')
-VER_MINOR := $(shell echo $(VERSION) | sed 's/^[0-9]\+\.\([0-9]\+\)\..*/\1/')
-VER_BUILD := $(shell echo $(VERSION) | sed 's/^[0-9]\+\.[0-9]\+\.\(.*\)/\1/')
+include /usr/share/dpkg/default.mk
 
-CFLAGS += -I. -g2 -DDEALLOCATE=0 -DVERSION=\"$(VERSION)\" -DVER_MAJOR=$(VER_MAJOR) -DVER_MINOR=$(VER_MINOR) -DVER_BUILD=$(VER_BUILD) -DSTANDALONE=1
+VER_MAJOR := $(shell echo $(DEB_VERSION_UPSTREAM) | sed 's/^\([0-9]\+\)\..*/\1/')
+VER_MINOR := $(shell echo $(DEB_VERSION_UPSTREAM) | sed 's/^[0-9]\+\.\([0-9]\+\)\..*/\1/')
+VER_BUILD := $(shell echo $(DEB_VERSION_UPSTREAM) | sed 's/^[0-9]\+\.[0-9]\+\.\(.*\)/\1/')
+
+CFLAGS += -I. -g2 -DDEALLOCATE=0 -DVERSION=\"$(DEB_VERSION_UPSTREAM)\" -DVER_MAJOR=$(VER_MAJOR) -DVER_MINOR=$(VER_MINOR) -DVER_BUILD=$(VER_BUILD) -DSTANDALONE=1
 LDFLAGS += -L.
 
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