debian/README.test

+Notes on how this package can be tested.
+────────────────────────────────────────
+
+This package can be tested by running the provided test:
+
+    sh run-unit-test
+
+in order to confirm its integrity.

debian/changelog

@@ -11,7 +11,7 @@ epcr (2.3.12-1-8) UNRELEASED; urgency=medium
   [ Saira Hussain ]
   * Add script to fetch the required data for testing
 
- -- Vagrant Default User <vagrant@contrib-testing.localdomain>  Mon, 24 Jun 2019 13:23:50 +0000
+ -- Saira Hussain <saira.h0213@zoho.com>  Mon, 24 Jun 2019 13:23:50 +0000
 
 epcr (2.3.12-1-7) unstable; urgency=medium
 

debian/ncbi-epcr.docs

 README.txt
 README.html
 debian/RETIRED_README.txt
+debian/tests/data
+debian/tests/run-unit-test
+debian/README.test

debian/rules

@@ -14,7 +14,7 @@ CFLAGS += -I. -g2 -DDEALLOCATE=0 -DVERSION=\"$(DEB_VERSION_UPSTREAM)\" -DVER_MAJ
 LDFLAGS += -L.
 
 %:
-	dh $@
+	dh $@ --no-parallel
 
 override_dh_auto_clean:
 	rm -fr epcr

debian/tests/control

+Tests: run-unit-test
+Depends: @
+Restrictions: allow-stderr

debian/tests/data/rbcL-primer.txt

+rbcL1/rbcLA	 TTGGCAGCATTYCGAGTAACTCC	 CCTTTRTAACGATCAAGRC

debian/tests/fetch_test_data.py

@@ -34,7 +34,7 @@ def fetch_ids(dbs, qr):
 
 
 def create_primer(pr):
-    pf = open('rbcL-primer.txt', 'w')
+    pf = open('data/rbcL-primer.txt', 'w')
     pf.write(pr)
     pf.write('\n')
     pf.close()

debian/tests/run-unit-test

+#!/bin/bash
+set -e
+
+pkg=ncbi-epcr
+
+if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
+  AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
+  # Double quote below to expand the temporary directory variable now versus
+  # later is on purpose.
+  # shellcheck disable=SC2064
+#  trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
+fi
+
+cp -a /usr/share/doc/${pkg}/data/* "${AUTOPKGTEST_TMP}"
+cd "${AUTOPKGTEST_TMP}"
+gunzip -r *
+
+re-PCR -S ginko.hash -n 5 -g 0 -d 100-300 -o rbcL5.rePCR rbcL-primer.txt