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debian Loading commit data...
inc Loading commit data...
AlignReads.c Loading commit data...
LICENSE Loading commit data...
Makefile Loading commit data...
Patch_ReAligner Loading commit data...
Patch_converter Loading commit data...
README Loading commit data...
alignend.c Loading commit data...
branch_graph.c Loading commit data...
branch_gviz.c Loading commit data...
char2int.c Loading commit data...
check.c Loading commit data...
chg_reads.c Loading commit data...
chk_consist.c Loading commit data...
chkconn.c Loading commit data...
clean_graph.c Loading commit data...
cleangraph.c Loading commit data...
collectpath.c Loading commit data...
consens.pl Loading commit data...
consensus.c Loading commit data...
count_edge.c Loading commit data...
count_vertex.c Loading commit data...
countdegree.c Loading commit data...
countmatch.c Loading commit data...
countnodes.c Loading commit data...
create_alignment.pl Loading commit data...
detach_bal.c Loading commit data...
detectoverlap.c Loading commit data...
eqtrans_bal.c Loading commit data...
eraseedge.c Loading commit data...
erasenext.c Loading commit data...
erosion.c Loading commit data...
errcorr-lapper-pair-mem.pl Loading commit data...
errcorr_fin_mem.c Loading commit data...
errcorr_pair_mem.c Loading commit data...
errcorrt_pair.c Loading commit data...
errcorrt_pair_mem.c Loading commit data...
eubatch.pl Loading commit data...
euindex.pl Loading commit data...
euler.css Loading commit data...
euler_cons.c Loading commit data...
euler_db.c Loading commit data...
euler_et.c Loading commit data...
filter_class.c Loading commit data...
findendreads.c Loading commit data...
free_align.c Loading commit data...
free_class.c Loading commit data...
free_graph.c Loading commit data...
free_nodes.c Loading commit data...
g_band.c Loading commit data...
g_band0.c Loading commit data...
graph.c Loading commit data...
html.c Loading commit data...
index.c Loading commit data...
initialize.c Loading commit data...
initialize_edge.c Loading commit data...
insert_edge.c Loading commit data...
interval.c Loading commit data...
l_band.c Loading commit data...
l_band0.c Loading commit data...
link_edge.c Loading commit data...
locpath.c Loading commit data...
makealn.c Loading commit data...
makedge.c Loading commit data...
makedge_new.c Loading commit data...
makegraph.c Loading commit data...
makeintv.c Loading commit data...
map_edge.c Loading commit data...
mapread.c Loading commit data...
markchim.c Loading commit data...
merge.c Loading commit data...
merge_gap.c Loading commit data...
merge_graph_path.c Loading commit data...
merge_vertex_path.c Loading commit data...
name.rul Loading commit data...
newreadpath.c Loading commit data...
newvertex.c Loading commit data...
output_align.c Loading commit data...
output_contig.c Loading commit data...
output_graph.c Loading commit data...
outputpairrules.c Loading commit data...
over-align-all.c Loading commit data...
over-align-phrap.c Loading commit data...
over-repeat-end-po.c Loading commit data...
over-repeat-end.c Loading commit data...
over-repeat-new.c Loading commit data...
overlapper-all.c Loading commit data...
pairreads.c Loading commit data...
pairreads1.c Loading commit data...
pairreads2.c Loading commit data...
pairreads3.c Loading commit data...
pairreads_file.c Loading commit data...
pairrule.c Loading commit data...
path.c Loading commit data...
po-prod.c Loading commit data...
random.c Loading commit data...
read_graph.c Loading commit data...
readalnseq.c Loading commit data...
readclass.c Loading commit data...
readoverlap.c Loading commit data...
readpair.c Loading commit data...
readpar.c Loading commit data...
readpath.c Loading commit data...
readphrapovp.c Loading commit data...
readqual.c Loading commit data...
readseq1by1.c Loading commit data...
realign2contig.pl Loading commit data...
reducepath.c Loading commit data...
rem_chim.c Loading commit data...
rm_edge.c Loading commit data...
rules.c Loading commit data...
seqcount.pl Loading commit data...
sf_sub.c Loading commit data...
shave_graph.c Loading commit data...
shave_graph_new.c Loading commit data...
splitbeg.c Loading commit data...
splitname.c Loading commit data...
stats.c Loading commit data...
subgraph.c Loading commit data...
trans_qual.c Loading commit data...
trim_align.c Loading commit data...
trimpath.c Loading commit data...
trimseq_qual.c Loading commit data...
vertex_run.c Loading commit data...
visit_comp.c Loading commit data...
width.c Loading commit data...
write_graph.c Loading commit data...
zigzag.c Loading commit data...