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debian/control
View file @ 1c628ddf
......@@ -13,7 +13,8 @@ Build-Depends: debhelper-compat (= 12),
libeigen3-dev,
opencl-c-headers,
ocl-icd-opencl-dev,
libopenslide-dev
libopenslide-dev,
git
Standards-Version: 4.3.0
Vcs-Browser: https://salsa.debian.org/med-team/fast
Vcs-Git: https://salsa.debian.org/med-team/fast.git
......
debian/patches/disable_tests.patch
View file @ 1c628ddf
Description: disable source's test suite
This is problematic and is currently disabled to not hinder productivity until this is figured out.
Author: Shayan Doust <hello@shayandoust.me>
Last-Update: 2019-08-08
---
Index: fast/CMakeLists.txt
===================================================================
--- fast.orig/CMakeLists.txt 2019-07-26 00:33:52.970078802 +0100
+++ fast/CMakeLists.txt 2019-07-26 02:58:25.548595558 +0100
--- fast.orig/CMakeLists.txt 2019-08-08 15:28:56.276921985 +0100
+++ fast/CMakeLists.txt 2019-08-08 15:28:56.276921985 +0100
@@ -15,8 +15,8 @@
include(cmake/Macros.cmake)
......
debian/patches/use_system_eigen.patch
View file @ 1c628ddf
Description: use libeigen-dev
This patch modifies some of the cmake files in order to use the system available libeigen-dev library instead of cmake downloading, building and linking.
Author: Shayan Doust <hello@shayandoust.me>
Last-Update: 2019-08-08
---
Index: fast/cmake/ExternalEigen.cmake
===================================================================
--- fast.orig/cmake/ExternalEigen.cmake 2019-07-26 15:41:31.256881570 +0100
+++ fast/cmake/ExternalEigen.cmake 2019-07-26 15:41:31.252881538 +0100
--- fast.orig/cmake/ExternalEigen.cmake 2019-08-08 14:52:02.618696327 +0100
+++ fast/cmake/ExternalEigen.cmake 2019-08-08 14:52:02.614696293 +0100
@@ -1,21 +1,21 @@
# Download and set up Eigen
......@@ -44,8 +50,8 @@ Index: fast/cmake/ExternalEigen.cmake
+#list(APPEND FAST_EXTERNAL_DEPENDENCIES eigen)
Index: fast/cmake/InstallFAST.cmake
===================================================================
--- fast.orig/cmake/InstallFAST.cmake 2019-07-26 15:41:31.256881570 +0100
+++ fast/cmake/InstallFAST.cmake 2019-07-26 15:41:31.252881538 +0100
--- fast.orig/cmake/InstallFAST.cmake 2019-08-08 14:52:02.618696327 +0100
+++ fast/cmake/InstallFAST.cmake 2019-08-08 14:52:02.614696293 +0100
@@ -185,10 +185,10 @@
)
......@@ -63,8 +69,8 @@ Index: fast/cmake/InstallFAST.cmake
DESTINATION fast/licenses/zlib/
Index: fast/CMakeLists.txt
===================================================================
--- fast.orig/CMakeLists.txt 2019-07-26 15:41:31.256881570 +0100
+++ fast/CMakeLists.txt 2019-07-26 15:42:22.785300550 +0100
--- fast.orig/CMakeLists.txt 2019-08-08 14:52:02.618696327 +0100
+++ fast/CMakeLists.txt 2019-08-08 14:52:02.614696293 +0100
@@ -153,7 +153,7 @@
endif()
endif()
......
debian/patches/use_system_openslide.cmake
View file @ 1c628ddf
Description: use libopenslide-dev
This patch will modify some of the cmake files in order to build using libopenslide-dev available on the system instead of cmake downloading, compiling and static linking.
Author: Shayan Doust <hello@shayandoust.me>
Last-Update: 2019-08-08
---
Index: fast/CMakeLists.txt
===================================================================
--- fast.orig/CMakeLists.txt 2019-07-26 22:17:23.542012300 +0100
+++ fast/CMakeLists.txt 2019-07-26 22:24:50.269644742 +0100
--- fast.orig/CMakeLists.txt 2019-08-08 14:49:11.365300187 +0100
+++ fast/CMakeLists.txt 2019-08-08 14:49:11.357300122 +0100
@@ -162,7 +162,7 @@
generate_export_header(FAST EXPORT_FILE_NAME FASTExport.hpp)
......@@ -13,8 +19,8 @@ Index: fast/CMakeLists.txt
target_link_libraries(FAST PUBLIC ${LIBRARIES} ${FAST_SYSTEM_LIBRARIES})
Index: fast/cmake/ExternalOpenSlide.cmake
===================================================================
--- fast.orig/cmake/ExternalOpenSlide.cmake 2019-07-26 22:17:23.542012300 +0100
+++ fast/cmake/ExternalOpenSlide.cmake 2019-07-26 22:22:53.392694417 +0100
--- fast.orig/cmake/ExternalOpenSlide.cmake 2019-08-08 14:49:11.365300187 +0100
+++ fast/cmake/ExternalOpenSlide.cmake 2019-08-08 14:49:11.357300122 +0100
@@ -1,17 +1,17 @@
# Download and set up OpenSlide
......
debian/patches/use_system_zlib.patch
View file @ 1c628ddf
Description: use system packaged libz
This patch modifies some of the cmake files to use the system available zlib library instead of cmake downloading, compiling and linking.
Author: Shayan Doust <hello@shayandoust.me>
Last-Update: 2019-08-08
---
Index: fast/cmake/ExternalZlib.cmake
===================================================================
--- fast.orig/cmake/ExternalZlib.cmake 2019-07-26 23:27:52.236396403 +0100
+++ fast/cmake/ExternalZlib.cmake 2019-07-26 23:27:52.232396370 +0100
--- fast.orig/cmake/ExternalZlib.cmake 2019-08-08 14:54:10.139738764 +0100
+++ fast/cmake/ExternalZlib.cmake 2019-08-08 14:54:10.135738732 +0100
@@ -1,24 +1,24 @@
# Download and set up zlib
......@@ -51,8 +57,8 @@ Index: fast/cmake/ExternalZlib.cmake
+#list(APPEND FAST_EXTERNAL_DEPENDENCIES zlib)
Index: fast/CMakeLists.txt
===================================================================
--- fast.orig/CMakeLists.txt 2019-07-26 23:27:52.236396403 +0100
+++ fast/CMakeLists.txt 2019-07-26 23:27:52.232396370 +0100
--- fast.orig/CMakeLists.txt 2019-08-08 14:54:10.139738764 +0100
+++ fast/CMakeLists.txt 2019-08-08 14:54:10.135738732 +0100
@@ -166,6 +166,7 @@
## Link everything
message("-- LIBS: ${LIBRARIES} ${FAST_SYSTEM_LIBRARIES}")
......@@ -63,8 +69,8 @@ Index: fast/CMakeLists.txt
endif()
Index: fast/cmake/InstallFAST.cmake
===================================================================
--- fast.orig/cmake/InstallFAST.cmake 2019-07-26 23:27:46.208347389 +0100
+++ fast/cmake/InstallFAST.cmake 2019-07-26 23:28:17.744603807 +0100
--- fast.orig/cmake/InstallFAST.cmake 2019-08-08 14:54:10.139738764 +0100
+++ fast/cmake/InstallFAST.cmake 2019-08-08 14:54:10.135738732 +0100
@@ -190,9 +190,9 @@
# DESTINATION fast/licenses/eigen/
#)
......