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debian/control
View file @ 49e9f339
......@@ -12,7 +12,8 @@ Build-Depends: debhelper-compat (= 12),
zlib1g-dev,
libeigen3-dev,
opencl-c-headers,
ocl-icd-opencl-dev
ocl-icd-opencl-dev,
libopenslide-dev
Standards-Version: 4.3.0
Vcs-Browser: https://salsa.debian.org/med-team/fast
Vcs-Git: https://salsa.debian.org/med-team/fast.git
......
debian/patches/series
View file @ 49e9f339
use_system_openslide.cmake
use_system_eigen.patch
use_system_zlib.patch
disable_tests.patch
debian/patches/use_system_openslide.cmake 0 → 100644
View file @ 49e9f339
Index: fast/CMakeLists.txt
===================================================================
--- fast.orig/CMakeLists.txt 2019-07-26 22:17:23.542012300 +0100
+++ fast/CMakeLists.txt 2019-07-26 22:24:50.269644742 +0100
@@ -162,7 +162,7 @@
generate_export_header(FAST EXPORT_FILE_NAME FASTExport.hpp)
include(cmake/OpenMP.cmake)
-
+target_link_libraries(FAST PUBLIC openslide)
## Link everything
message("-- LIBS: ${LIBRARIES} ${FAST_SYSTEM_LIBRARIES}")
target_link_libraries(FAST PUBLIC ${LIBRARIES} ${FAST_SYSTEM_LIBRARIES})
Index: fast/cmake/ExternalOpenSlide.cmake
===================================================================
--- fast.orig/cmake/ExternalOpenSlide.cmake 2019-07-26 22:17:23.542012300 +0100
+++ fast/cmake/ExternalOpenSlide.cmake 2019-07-26 22:22:53.392694417 +0100
@@ -1,17 +1,17 @@
# Download and set up OpenSlide
-include(cmake/Externals.cmake)
+#include(cmake/Externals.cmake)
-if(WIN32)
+#if(WIN32)
-ExternalProject_Add(openslide
- PREFIX ${FAST_EXTERNAL_BUILD_DIR}/openslide
- BINARY_DIR ${FAST_EXTERNAL_BUILD_DIR}/openslide
- URL "https://github.com/openslide/openslide-winbuild/releases/download/v20171122/openslide-win64-20171122.zip"
- CONFIGURE_COMMAND ${CMAKE_COMMAND} -E copy_directory ${FAST_EXTERNAL_BUILD_DIR}/openslide/src/openslide/ ${FAST_EXTERNAL_INSTALL_DIR}
- BUILD_COMMAND ""
- INSTALL_COMMAND ""
-)
+#ExternalProject_Add(openslide
+# PREFIX ${FAST_EXTERNAL_BUILD_DIR}/openslide
+# BINARY_DIR ${FAST_EXTERNAL_BUILD_DIR}/openslide
+# URL "https://github.com/openslide/openslide-winbuild/releases/download/v20171122/openslide-win64-20171122.zip"
+# CONFIGURE_COMMAND ${CMAKE_COMMAND} -E copy_directory ${FAST_EXTERNAL_BUILD_DIR}/openslide/src/openslide/ ${FAST_EXTERNAL_INSTALL_DIR}
+# BUILD_COMMAND ""
+# INSTALL_COMMAND ""
+#)
-list(APPEND FAST_EXTERNAL_DEPENDENCIES openslide)
-endif()
\ No newline at end of file
+#list(APPEND FAST_EXTERNAL_DEPENDENCIES openslide)
+#endif()
debian/patches/use_system_zlib.patch
View file @ 49e9f339
Index: fast/cmake/ExternalZlib.cmake
===================================================================
--- fast.orig/cmake/ExternalZlib.cmake 2019-07-26 09:34:34.497861993 +0100
+++ fast/cmake/ExternalZlib.cmake 2019-07-26 09:34:34.493861960 +0100
--- fast.orig/cmake/ExternalZlib.cmake 2019-07-26 23:27:52.236396403 +0100
+++ fast/cmake/ExternalZlib.cmake 2019-07-26 23:27:52.232396370 +0100
@@ -1,24 +1,24 @@
# Download and set up zlib
......@@ -51,8 +51,8 @@ Index: fast/cmake/ExternalZlib.cmake
+#list(APPEND FAST_EXTERNAL_DEPENDENCIES zlib)
Index: fast/CMakeLists.txt
===================================================================
--- fast.orig/CMakeLists.txt 2019-07-26 09:34:34.497861993 +0100
+++ fast/CMakeLists.txt 2019-07-26 09:34:59.850068126 +0100
--- fast.orig/CMakeLists.txt 2019-07-26 23:27:52.236396403 +0100
+++ fast/CMakeLists.txt 2019-07-26 23:27:52.232396370 +0100
@@ -166,6 +166,7 @@
## Link everything
message("-- LIBS: ${LIBRARIES} ${FAST_SYSTEM_LIBRARIES}")
......@@ -61,3 +61,20 @@ Index: fast/CMakeLists.txt
if(FAST_MODULE_Visualization AND FAST_BUILD_QT5)
qt5_use_modules(FAST Widgets OpenGL) # Add Qt 5 modules
endif()
Index: fast/cmake/InstallFAST.cmake
===================================================================
--- fast.orig/cmake/InstallFAST.cmake 2019-07-26 23:27:46.208347389 +0100
+++ fast/cmake/InstallFAST.cmake 2019-07-26 23:28:17.744603807 +0100
@@ -190,9 +190,9 @@
# DESTINATION fast/licenses/eigen/
#)
# zlib
-install(FILES ${FAST_EXTERNAL_BUILD_DIR}/zlib/src/zlib/README
- DESTINATION fast/licenses/zlib/
-)
+#install(FILES ${FAST_EXTERNAL_BUILD_DIR}/zlib/src/zlib/README
+# DESTINATION fast/licenses/zlib/
+#)
# OpenIGTLink
install(FILES ${FAST_EXTERNAL_BUILD_DIR}/OpenIGTLink/src/OpenIGTLink/LICENSE.txt
DESTINATION fast/licenses/OpenIGTLink/