debian/changelog

 fasta3 (36.3.8g-1) unstable; urgency=low
 
+  [ Andreas Tille ]
+  * Moved packaging from SVN to Git
+
+  [ Steffen Moeller]
   * Initial release (Closes: #895740)
 
   * New upstream version.
   * Fixed remaining lintian error.
   * Bumped policy to 4.1.4.
 
+  [ Alexandre Mestiashvili]
+  * Add zlib1g-dev to Build-Depends
+  * Apply cme fix dpkg, fixing indentation, secure url and patch descriptions
 
  -- Steffen Moeller <moeller@debian.org>  Sun, 15 Apr 2018 16:08:39 +0200
-
-fasta3 (36.3.8f-1) UNRELEASED; urgency=low
-
-  [ Andreas Tille ]
-  * Moved packaging from SVN to Git
-
- -- Steffen Moeller <moeller@debian.org>  Tue, 05 Dec 2017 17:19:26 +0100

debian/control

 Source: fasta3
-Section: non-free/science
-Priority: optional
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Uploaders: Steffen Moeller <moeller@debian.org>
-Build-Depends: debhelper (>= 9)
-Standards-Version: 4.1.4
+Section: non-free/science
+XS-Autobuild: no
+Priority: optional
+Build-Depends: debhelper (>= 9),
+               zlib1g-dev
+Standards-Version: 4.1.3
 Vcs-Browser: https://salsa.debian.org/med-team/fasta3
 Vcs-Git: https://salsa.debian.org/med-team/fasta3.git
 Homepage: http://fasta.bioch.virginia.edu
 
 Package: fasta3
 Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}
+Depends: ${shlibs:Depends},
+         ${misc:Depends}
 Description: tools for searching collections of biological sequences
  The FASTA programs find regions of local or global similarity between
  Protein or DNA sequences, either by searching Protein or DNA databases,
@@ -21,7 +24,7 @@ Description: tools for searching collections of biological sequences
  evolutionary relationships between sequences as well as help identify
  members of gene families.
  .
- * Protein
+  * Protein
  .
   - Protein-protein FASTA
   - Protein-protein Smith-Waterman (ssearch)
@@ -29,28 +32,28 @@ Description: tools for searching collections of biological sequences
   - Global/Local protein-protein (glsearch)
   - Protein-protein with unordered peptides (fasts)
   - Protein-protein with mixed peptide sequences (fastf)
- .	
- * Nucleotide
+ .
+  * Nucleotide
  .
   - Nucleotide-Nucleotide (DNA/RNA fasta)
   - Ordered Nucleotides vs Nucleotide (fastm)
   - Un-ordered Nucleotides vs Nucleotide (fasts)
  .
- * Translated
+  * Translated
  .
   - Translated DNA (with frameshifts, e.g. ESTs)
     vs Proteins (fastx/fasty)
   - Protein vs Translated DNA (with frameshifts)
     (tfastx/tfasty)
   - Peptides vs Translated DNA (tfasts)
- . 	
- * Statistical Significance
+ .
+  * Statistical Significance
  .
   - Protein vs Protein shuffle (prss)
   - DNA vs DNA shuffle (prss)
   - Translated DNA vs Protein shuffle (prfx)
  .
- * Local Duplications
+  * Local Duplications
  .
   - Local Protein alignments (lalign)
   - Plot Protein alignment "dot-plot" (plalign)
@@ -59,7 +62,8 @@ Description: tools for searching collections of biological sequences
 
 Package: fasta3-doc
 Architecture: all
-Depends: ${shlibs:Depends}, ${misc:Depends}
+Depends: ${shlibs:Depends},
+         ${misc:Depends}
 Description: user guide for FASTA tools
  The FASTA programs find regions of local or global similarity between
  Protein or DNA sequences, either by searching Protein or DNA databases,
@@ -72,4 +76,3 @@ Description: user guide for FASTA tools
  The use of the package's many binaries and the equally representated
  conceptual approaches towards sequence analyses are summarised in
  this PDF.
- 

debian/copyright

-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: FASTA
 Source: http://faculty.virginia.edu/wrpearson/fasta/fasta3/
 

debian/patches/Makefile.patch

+Description: Makefile
 Index: fasta3/make/Makefile
 ===================================================================
 --- fasta3.orig/make/Makefile

debian/patches/OVERFLOW.patch

+Description: OVERFLOW
 Index: fasta3/src/dropnnw2.c
 ===================================================================
 --- fasta3.orig/src/dropnnw2.c