debian/changelog

+fastx-toolkit (0.0.14-6) unstable; urgency=medium
+
+  * debhelper 11
+  * Point Vcs fields to salsa.debian.org
+  * Standards-Version: 4.2.1
+  * Override script-with-language-extension
+    ( see https://lists.debian.org/debian-med/2018/06/msg00043.html )
+
+ -- Andreas Tille <tille@debian.org>  Sun, 23 Sep 2018 17:12:39 +0200
+
 fastx-toolkit (0.0.14-5) unstable; urgency=low
 
   [ Steffen Moeller ]

debian/compat

-10
+11

debian/control

@@ -4,16 +4,16 @@ Uploaders: Charles Plessy <plessy@debian.org>,
            Andreas Tille <tille@debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 10),
+Build-Depends: debhelper (>= 11~),
                libtool,
                pkg-config,
                libgtextutils-dev,
                help2man,
                libgd-graph-perl,
                libperlio-gzip-perl
-Standards-Version: 4.1.0
-Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/fastx-toolkit.git
-Vcs-Git: https://anonscm.debian.org/git/debian-med/fastx-toolkit.git
+Standards-Version: 4.2.1
+Vcs-Browser: https://salsa.debian.org/med-team/fastx-toolkit
+Vcs-Git: https://salsa.debian.org/med-team/fastx-toolkit.git
 Homepage: http://hannonlab.cshl.edu/fastx_toolkit/
 
 Package: fastx-toolkit

debian/lintian-overrides

+# see https://lists.debian.org/debian-med/2018/06/msg00043.html
+fastx-toolkit: script-with-language-extension usr/bin/fasta_clipping_histogram.pl
+fastx-toolkit: script-with-language-extension usr/bin/fastq_quality_boxplot_graph.sh
+fastx-toolkit: script-with-language-extension usr/bin/fastx_barcode_splitter.pl
+fastx-toolkit: script-with-language-extension usr/bin/fastx_nucleotide_distribution_graph.sh
+fastx-toolkit: script-with-language-extension usr/bin/fastx_nucleotide_distribution_line_graph.sh