Commit 73979d41 authored by Sascha Steinbiss's avatar Sascha Steinbiss
Browse files

Python3 conversion and housekeeping

parent 9ea70945

debian/changelog

+9 −0
Original line number Diff line number Diff line 
genometools (1.5.10+ds-4) unstable; urgency=medium



  * Build Python3 bindings package instead of Python2.

  * Use debhelper 12.

  * Bump Standards-Version.

  * Update lintian override location and tags.



 -- Sascha Steinbiss <satta@debian.org>  Sun, 08 Sep 2019 17:11:59 +0200



genometools (1.5.10+ds-3) unstable; urgency=medium



  * debhelper 11

debian/compat

+1 −1
Original line number Diff line number Diff line 
11
 
12

debian/control

+8 −7
Original line number Diff line number Diff line
@@ -4,7 +4,7 @@ Uploaders: Sascha Steinbiss <satta@debian.org>, 
           Andreas Tille <tille@debian.org>

Section: science

Priority: optional

Build-Depends: debhelper (>= 11~),

Build-Depends: debhelper (>= 12),

               dh-python,

               liblua5.1-0-dev,

               lua-md5-dev,
@@ -23,7 +23,8 @@ Build-Depends: debhelper (>= 11~), 
               texlive-fonts-extra,

               texlive-latex-recommended,

               texlive-fonts-recommended,

               python,

               python3-all,

               python3-setuptools,

               asciidoc-base,

               libxml2-utils,

               xsltproc,
@@ -32,7 +33,7 @@ Build-Depends: debhelper (>= 11~), 
               docbook-xml,

               faketime,

               imagemagick

Standards-Version: 4.2.1

Standards-Version: 4.4.0

Vcs-Browser: https://salsa.debian.org/med-team/genometools

Vcs-Git: https://salsa.debian.org/med-team/genometools.git

Homepage: http://genometools.org
@@ -109,15 +110,15 @@ Description: documentation for GenomeTools 
 annotation handling, sequence compression, index structure generation and

 access, annotation visualization, and much more.



Package: python-genometools

Package: python3-genometools

Architecture: all

Section: python

Depends: ${shlibs:Depends},

         ${misc:Depends},

         ${python:Depends},

         ${python3:Depends},

         libgenometools0

Description: Python bindings for genometools

 Partial Python2 bindings for the GenomeTools library. Besides basic

Description: Python3 bindings for genometools

 Partial Python3 bindings for the GenomeTools library. Besides basic

 bioinformatics data structures, the library contains components for sequence

 and annotation handling, sequence compression, index structure generation and

 access, efficient matching, annotation visualization and much more.

debian/rules

+3 −3
Original line number Diff line number Diff line
@@ -31,7 +31,7 @@ ifeq ($(shell faketime 'last friday' date > /dev/null 2> /dev/null; echo $$?),0) 
endif



%:

	dh $@ --with python2

	dh $@ --with python3



override_dh_auto_clean:

	mkdir -p obj
@@ -66,5 +66,5 @@ endif 
override_dh_auto_install:

	dh_auto_install -- installmanpages useshared=yes \

	  x32=$(X32) 64bit=$(64BIT) errorcheck=no prefix=$(DESTDIR)/usr

	dh_auto_install --sourcedirectory=gtpython \

	  --destdir=$(CURDIR)/debian/python-genometools
 
	dh_auto_install --sourcedirectory=gtpython --buildsystem=pybuild \

	  --destdir=$(CURDIR)/debian/python3-genometools

debian/source.lintian-overrides→debian/source/lintian-overrides

+2 −0
Original line number Diff line number Diff line 
# Upstream does not provide signed tarballs.

genometools source: debian-watch-may-check-gpg-signature
 
genometools source: debian-watch-does-not-check-gpg-signature