debian/changelog

-gmap (2019-01-24-1) UNRELEASED; urgency=medium
+gmap (2019-01-24-1) unstable; urgency=medium
 
+  [ Andreas Tille ]
   * New upstream version
   * debhelper 12
   * Standards-Version: 4.3.0
   * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
 
- -- Andreas Tille <tille@debian.org>  Thu, 31 Jan 2019 14:07:07 +0100
+  [ Alexandre Mestiashvili ]
+  * Drop bigendian.patch, as gmap is build for amd64 only
+  * Set Architecture to amd64 in d/control
+  * Remove overrides for gmapl* and gsnapl*
+
+ -- Alexandre Mestiashvili <mestia@debian.org>  Thu, 31 Jan 2019 19:39:59 +0100
+
+gmap (2018-07-04-5) unstable; urgency=medium
+
+  * Limit architectures to amd64
+  * Use wildcard for lintian overrides for gmap/gsnap tools
+  * Upload to unstable
+
+ -- Alexandre Mestiashvili <mestia@debian.org>  Sun, 06 Jan 2019 14:36:33 +0100
 
 gmap (2018-09-27-2) experimental; urgency=medium
 

debian/control

@@ -17,7 +17,7 @@ Vcs-Git: https://salsa.debian.org/med-team/gmap.git
 Homepage: http://research-pub.gene.com/gmap
 
 Package: gmap
-Architecture: any
+Architecture: amd64
 Depends: ${misc:Depends},
          ${perl:Depends},
          ${shlibs:Depends}

debian/gmap.lintian-overrides

-gmap: binary-without-manpage usr/bin/gmap.sse41
-gmap: binary-without-manpage usr/bin/gsnap.sse41
-gmap: binary-without-manpage usr/bin/gmapl
-gmap: binary-without-manpage usr/bin/gmapl.sse41
-gmap: binary-without-manpage usr/bin/gsnapl
-gmap: binary-without-manpage usr/bin/gsnapl.sse41
+gmap: binary-without-manpage usr/bin/gmap.*
+gmap: binary-without-manpage usr/bin/gsnap.*

debian/patches/bigendian.patch

-Subject: Update bigendian.[c,h] files in attempt to fix builds on arm and mips
-Author: Upstream
-Forwarded: not-needed
---- a/src/bigendian.c
-+++ b/src/bigendian.c
-@@ -19,6 +19,45 @@ Bigendian_write_char (unsigned char valu
- }
- 
- 
-+
-+/************************************************************************
-+ *   Unsigned short
-+ ************************************************************************/
-+
-+size_t
-+Bigendian_fwrite_ushort (unsigned short value, FILE *fp) {
-+  unsigned char buf[2];
-+
-+  buf[1] = value & 0xff;
-+  buf[0] = (value >>= 8) & 0xff;
-+  if (fwrite(buf,sizeof(unsigned short),2,fp) == 0) {
-+    /* Should set error indicator for stream and set errno */
-+    return 0;
-+  } else {
-+    return 1;
-+  }
-+}
-+
-+size_t
-+Bigendian_fwrite_ushorts (unsigned short *array, int n, FILE *fp) {
-+  unsigned char buf[4];
-+  unsigned short value;
-+  int i;
-+  
-+  for (i = 0; i < n; i++) {
-+    value = array[i];
-+    buf[1] = value & 0xff;
-+    buf[0] = (value >>= 8) & 0xff;
-+    if (fwrite(buf,sizeof(unsigned short),2,fp) == 0) {
-+      /* Should set error indicator for stream and set errno */
-+      return 0;
-+    }
-+  }
-+  return n;
-+}
-+
-+
-+
- /************************************************************************
-  *   Unsigned short
-  ************************************************************************/
---- a/src/bigendian.h
-+++ b/src/bigendian.h
-@@ -101,6 +101,9 @@ Bigendian_fwrite_double (double value, F
- #define FWRITE_USHORT(x,fp) Bigendian_fwrite_ushort(x,fp)
- #define FWRITE_USHORTS(a,n,fp) Bigendian_fwrite_ushorts(a,n,fp)
- 
-+#define FWRITE_USHORT(x,fp) Bigendian_fwrite_ushort(x,fp)
-+#define FWRITE_USHORTS(a,n,fp) Bigendian_fwrite_ushorts(a,n,fp)
-+
- #define FREAD_CHARS(a,n,fp) fread(a,sizeof(char),n,fp)
- #define FWRITE_CHARS(a,n,fp) fwrite(a,sizeof(char),n,fp)
- 

debian/patches/series

-bigendian.patch
 only-do-cpuid-on-amd64-i386.patch
 install-data-local