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Commits on Source (5)
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client/CHANGELOG
View file @ 452a47f5
......@@ -6,6 +6,16 @@
# rel-1-7-patches
------------------------------------------------
1.7.3
FIX: failure to merge patients under some conditions [thanks Marc]
FIX: exception on creating person duplicates
FIX: failure to delete inbox messages w/o a receiver
FIX: handling of single_selection in generic list selection [thanks Scott Talbert]
FIX: setting of initial size of main frame [thanks Tim Roberts]
IMPROVED: robustify tarballing script against network flukes
1.7.2
FIX: GTK3 related size adjustments for PatientOverview/SimpleSoap plugins
......
client/business/gmPerson.py
View file @ 452a47f5
......@@ -988,60 +988,55 @@ class cPerson(gmBusinessDBObject.cBusinessDBObject):
})
# transfer names
# 1) disambiguate names in old patient
# 1) hard-disambiguate all inactive names in old patient
# (the active one will be disambiguated upon being moved)
queries.append ({
'cmd': u"""
UPDATE dem.names d_n1 SET
lastnames = lastnames || coalesce (
' (from "' || (SELECT comment FROM dem.identity WHERE pk = %%(pat2del)s) || '")',
' (%s)'
)
comment = coalesce (
comment, ''
) || coalesce (
' (from identity: "' || (SELECT comment FROM dem.identity WHERE pk = %%(pat2del)s) || '")',
''
) || ' (during: "%s")'
WHERE
d_n1.id_identity = %%(pat2del)s
AND
EXISTS (
SELECT 1 FROM dem.names d_n2
WHERE
d_n2.id_identity = %%(pat2keep)s
AND
d_n2.lastnames = d_n1.lastnames
AND
d_n2.firstnames = d_n1.firstnames
)""" % distinguisher,
""" % distinguisher,
'args': args
})
# 2) move inactive ones (dupes are expected to have been eliminated in step 1 above)
queries.append ({
'cmd': u"""
UPDATE dem.names SET
id_identity = %%(pat2keep)s,
comment = coalesce(comment || ' (%s)', '%s')
UPDATE dem.names d_n SET
id_identity = %(pat2keep)s,
lastnames = lastnames || ' [' || random()::TEXT || ']'
WHERE
id_identity = %%(pat2del)s
d_n.id_identity = %(pat2del)s
AND
active IS false
""" % (distinguisher, distinguisher),
d_n.active IS false
""",
'args': args
})
# 3) copy active name (because each identity MUST have at most one
# *active* name so we can't just UPDATE over to pat2keep),
# # also, needs de-duplication or else it would conflict with *itself*
# # on pat2keep, said de-duplication happened in step 0 above
# # whereby pat2del is made unique by means of adding a pseudo-random
# # dem.identity.comment
# 3) copy active name into pat2keep as an inactive name,
# because each identity MUST have at LEAST one name,
# we can't simply UPDATE over to pat2keep
# also, needs de-duplication or else it would conflict with
# *itself* on pat2keep
queries.append ({
'cmd': u"""
INSERT INTO dem.names (
id_identity, active, lastnames, firstnames, preferred, comment
id_identity, active, firstnames, preferred, comment,
lastnames
)
SELECT
%%(pat2keep)s, false, lastnames, firstnames, preferred, coalesce(comment || ' (%s)', '%s')
%(pat2keep)s, false, firstnames, preferred, comment,
lastnames || ' [' || random()::text || ']'
FROM dem.names d_n
WHERE
d_n.id_identity = %%(pat2del)s
d_n.id_identity = %(pat2del)s
AND
d_n.active IS true
""" % (distinguisher, distinguisher),
""",
'args': args
})
......@@ -1144,7 +1139,10 @@ class cPerson(gmBusinessDBObject.cBusinessDBObject):
script.write(u'--COMMIT;\n')
script.close()
try:
gmPG2.run_rw_queries(link_obj = link_obj, queries = queries, end_tx = True)
except StandardError:
return False, _('The merge failed. Check the log and [%s]') % script_name
self.add_external_id (
type_name = u'merged GNUmed identity primary key',
......@@ -2345,6 +2343,7 @@ INSERT INTO dem.names (
currval('dem.identity_pk_seq'), coalesce(%s, 'xxxDEFAULTxxx'), coalesce(%s, 'xxxDEFAULTxxx')
) RETURNING id_identity"""
# cmd2 = u"select dem.add_name(currval('dem.identity_pk_seq')::integer, coalesce(%s, 'xxxDEFAULTxxx'), coalesce(%s, 'xxxDEFAULTxxx'), True)"
try:
rows, idx = gmPG2.run_rw_queries (
queries = [
{'cmd': cmd1, 'args': [gender, dob]},
......@@ -2353,6 +2352,10 @@ INSERT INTO dem.names (
],
return_data = True
)
except StandardError:
_log.exception('cannot create identity')
gmLog2.log_stack_trace()
return None
ident = cPerson(aPK_obj = rows[0][0])
gmHooks.run_hook_script(hook = u'post_person_creation')
return ident
......@@ -2681,6 +2684,15 @@ if __name__ == '__main__':
def test_ext_id():
person = cPerson(aPK_obj = 12)
print person.suggest_external_id(target = u'Orthanc')
#--------------------------------------------------------
def test_assimilate_identity():
patient = cPatient(12)
set_active_patient(patient = patient)
curr_pat = gmCurrentPatient()
other_pat = cIdentity(1111111)
curr_pat.assimilate_identity(other_identity=None)
#--------------------------------------------------------
#test_dto_person()
#test_identity()
......@@ -2697,7 +2709,8 @@ if __name__ == '__main__':
#test_export_area()
#test_ext_id()
#test_vcf()
test_ext_id()
test_current_patient()
#test_ext_id()
#test_current_patient()
test_assimilate_identity()
#============================================================
client/doc/api/Gnumed-module.html
View file @ 452a47f5
......@@ -743,10 +743,12 @@
<li> <strong class="uidlink"><a href="Gnumed.wxGladeWidgets.wxgInboxMessageEAPnl-module.html">Gnumed.wxGladeWidgets.wxgInboxMessageEAPnl</a></strong> </li>
<li> <strong class="uidlink"><a href="Gnumed.wxGladeWidgets.wxgIssueSelectionDlg-module.html">Gnumed.wxGladeWidgets.wxgIssueSelectionDlg</a></strong> </li>
<li> <strong class="uidlink"><a href="Gnumed.wxGladeWidgets.wxgItemPickerDlg-module.html">Gnumed.wxGladeWidgets.wxgItemPickerDlg</a></strong> </li>
<li> <strong class="uidlink"><a href="Gnumed.wxGladeWidgets.wxgLabRelatedDocumentsPnl-module.html">Gnumed.wxGladeWidgets.wxgLabRelatedDocumentsPnl</a></strong> </li>
<li> <strong class="uidlink"><a href="Gnumed.wxGladeWidgets.wxgMeasurementEditAreaPnl-module.html">Gnumed.wxGladeWidgets.wxgMeasurementEditAreaPnl</a></strong> </li>
<li> <strong class="uidlink"><a href="Gnumed.wxGladeWidgets.wxgMeasurementOrgEAPnl-module.html">Gnumed.wxGladeWidgets.wxgMeasurementOrgEAPnl</a></strong> </li>
<li> <strong class="uidlink"><a href="Gnumed.wxGladeWidgets.wxgMeasurementTypeEAPnl-module.html">Gnumed.wxGladeWidgets.wxgMeasurementTypeEAPnl</a></strong> </li>
<li> <strong class="uidlink"><a href="Gnumed.wxGladeWidgets.wxgMeasurementsAsListPnl-module.html">Gnumed.wxGladeWidgets.wxgMeasurementsAsListPnl</a></strong> </li>
<li> <strong class="uidlink"><a href="Gnumed.wxGladeWidgets.wxgMeasurementsAsMostRecentListPnl-module.html">Gnumed.wxGladeWidgets.wxgMeasurementsAsMostRecentListPnl</a></strong> </li>
<li> <strong class="uidlink"><a href="Gnumed.wxGladeWidgets.wxgMeasurementsAsTablePnl-module.html">Gnumed.wxGladeWidgets.wxgMeasurementsAsTablePnl</a></strong> </li>
<li> <strong class="uidlink"><a href="Gnumed.wxGladeWidgets.wxgMeasurementsByBatteryPnl-module.html">Gnumed.wxGladeWidgets.wxgMeasurementsByBatteryPnl</a></strong> </li>
<li> <strong class="uidlink"><a href="Gnumed.wxGladeWidgets.wxgMeasurementsByDayPnl-module.html">Gnumed.wxGladeWidgets.wxgMeasurementsByDayPnl</a></strong> </li>
......@@ -1011,7 +1013,7 @@
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......
client/doc/api/Gnumed-pysrc.html
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client/doc/api/Gnumed.artwork-module.html
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......
client/doc/api/Gnumed.artwork-pysrc.html
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......@@ -99,7 +99,7 @@ expandto(location.href);
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client/doc/api/Gnumed.artwork.checkboxOff-module.html
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......@@ -154,7 +154,7 @@
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......
client/doc/api/Gnumed.artwork.checkboxOff-pysrc.html
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......@@ -125,7 +125,7 @@ expandto(location.href);
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client/doc/api/Gnumed.artwork.checkboxOn-module.html
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......@@ -154,7 +154,7 @@
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......
client/doc/api/Gnumed.artwork.checkboxOn-pysrc.html
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client/doc/api/Gnumed.business-module.html
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......
client/doc/api/Gnumed.business-pysrc.html
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......@@ -99,7 +99,7 @@ expandto(location.href);
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client/doc/api/Gnumed.business.gmATC-module.html
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......@@ -239,7 +239,7 @@
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......
client/doc/api/Gnumed.business.gmATC-pysrc.html
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......@@ -2394,7 +2394,7 @@ expandto(location.href);
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......
client/doc/api/Gnumed.business.gmAllergy-module.html
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......@@ -240,7 +240,7 @@
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......
client/doc/api/Gnumed.business.gmAllergy-pysrc.html
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Generated by Epydoc 3.0.1
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client/doc/api/Gnumed.business.gmAllergy.cAllergy-class.html
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......
client/doc/api/Gnumed.business.gmAllergy.cAllergyState-class.html
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Generated by Epydoc 3.0.1
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......
client/doc/api/Gnumed.business.gmArriba-module.html
View file @ 452a47f5
......@@ -152,7 +152,7 @@
<tr>
<td align="left" class="footer">
Generated by Epydoc 3.0.1
on Thu May 10 01:55:20 2018
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......
client/doc/api/Gnumed.business.gmArriba-pysrc.html
View file @ 452a47f5
......@@ -482,10 +482,11 @@ Gnumed.wxpython.gui.gmXdtViewer._log" class="py-name" href="Gnumed.business.gmAr
<a name="L96"></a><tt class="py-lineno"> 96</tt> <tt class="py-line"><tt class="py-string"> &lt;/speicherorte&gt;</tt> </tt>
<a name="L97"></a><tt class="py-lineno"> 97</tt> <tt class="py-line"><tt class="py-string">&lt;/konsultation&gt;</tt> </tt>
<a name="L98"></a><tt class="py-lineno"> 98</tt> <tt class="py-line"><tt class="py-string">"""</tt> </tt>
<a name="L99"></a><tt class="py-lineno"> 99</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-20" class="py-name" targets="Variable Gnumed.business.gmClinicalCalculator.cClinicalCalculator.patient=Gnumed.business.gmClinicalCalculator.cClinicalCalculator-class.html#patient,Variable Gnumed.wxpython.gmEMRBrowser.cEMRTree.patient=Gnumed.wxpython.gmEMRBrowser.cEMRTree-class.html#patient,Variable Gnumed.wxpython.gmFormWidgets.cReceiverSelectionDlg.patient=Gnumed.wxpython.gmFormWidgets.cReceiverSelectionDlg-class.html#patient,Variable Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsAsListPnl.patient=Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsAsListPnl-class.html#patient,Variable Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsAsTablePnl.patient=Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsAsTablePnl-class.html#patient,Variable Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsByBatteryPnl.patient=Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsByBatteryPnl-class.html#patient,Variable Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsByDayPnl.patient=Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsByDayPnl-class.html#patient,Variable Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsByIssuePnl.patient=Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsByIssuePnl-class.html#patient,Variable Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsGrid.patient=Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsGrid-class.html#patient,Variable Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsNb.patient=Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsNb-class.html#patient,Variable Gnumed.wxpython.gmMedicationWidgets.cCurrentSubstancesGrid.patient=Gnumed.wxpython.gmMedicationWidgets.cCurrentSubstancesGrid-class.html#patient,Variable Gnumed.wxpython.gmNarrativeWidgets.cFancySoapEditorPnl.patient=Gnumed.wxpython.gmNarrativeWidgets.cFancySoapEditorPnl-class.html#patient,Variable Gnumed.wxpython.gmPregWidgets.cEdcCalculatorDlg.patient=Gnumed.wxpython.gmPregWidgets.cEdcCalculatorDlg-class.html#patient,Package Gnumed.wxpython.patient=Gnumed.wxpython.patient-module.html"><a title="Gnumed.business.gmClinicalCalculator.cClinicalCalculator.patient
<a name="L99"></a><tt class="py-lineno"> 99</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-20" class="py-name" targets="Variable Gnumed.business.gmClinicalCalculator.cClinicalCalculator.patient=Gnumed.business.gmClinicalCalculator.cClinicalCalculator-class.html#patient,Variable Gnumed.wxpython.gmEMRBrowser.cEMRTree.patient=Gnumed.wxpython.gmEMRBrowser.cEMRTree-class.html#patient,Variable Gnumed.wxpython.gmFormWidgets.cReceiverSelectionDlg.patient=Gnumed.wxpython.gmFormWidgets.cReceiverSelectionDlg-class.html#patient,Variable Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsAsListPnl.patient=Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsAsListPnl-class.html#patient,Variable Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsAsMostRecentListPnl.patient=Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsAsMostRecentListPnl-class.html#patient,Variable Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsAsTablePnl.patient=Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsAsTablePnl-class.html#patient,Variable Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsByBatteryPnl.patient=Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsByBatteryPnl-class.html#patient,Variable Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsByDayPnl.patient=Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsByDayPnl-class.html#patient,Variable Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsByIssuePnl.patient=Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsByIssuePnl-class.html#patient,Variable Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsGrid.patient=Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsGrid-class.html#patient,Variable Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsNb.patient=Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsNb-class.html#patient,Variable Gnumed.wxpython.gmMedicationWidgets.cCurrentSubstancesGrid.patient=Gnumed.wxpython.gmMedicationWidgets.cCurrentSubstancesGrid-class.html#patient,Variable Gnumed.wxpython.gmNarrativeWidgets.cFancySoapEditorPnl.patient=Gnumed.wxpython.gmNarrativeWidgets.cFancySoapEditorPnl-class.html#patient,Variable Gnumed.wxpython.gmPregWidgets.cEdcCalculatorDlg.patient=Gnumed.wxpython.gmPregWidgets.cEdcCalculatorDlg-class.html#patient,Package Gnumed.wxpython.patient=Gnumed.wxpython.patient-module.html"><a title="Gnumed.business.gmClinicalCalculator.cClinicalCalculator.patient
Gnumed.wxpython.gmEMRBrowser.cEMRTree.patient
Gnumed.wxpython.gmFormWidgets.cReceiverSelectionDlg.patient
Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsAsListPnl.patient
Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsAsMostRecentListPnl.patient
Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsAsTablePnl.patient
Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsByBatteryPnl.patient
Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsByDayPnl.patient
......@@ -502,6 +503,7 @@ Gnumed.wxpython.patient" class="py-name" href="Gnumed.business.gmArriba-pysrc.ht
Gnumed.wxpython.gmEMRBrowser.cEMRTree.patient
Gnumed.wxpython.gmFormWidgets.cReceiverSelectionDlg.patient
Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsAsListPnl.patient
Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsAsMostRecentListPnl.patient
Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsAsTablePnl.patient
Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsByBatteryPnl.patient
Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsByDayPnl.patient
......@@ -523,6 +525,7 @@ Gnumed.wxpython.patient" class="py-name" href="Gnumed.business.gmArriba-pysrc.ht
Gnumed.wxpython.gmEMRBrowser.cEMRTree.patient
Gnumed.wxpython.gmFormWidgets.cReceiverSelectionDlg.patient
Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsAsListPnl.patient
Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsAsMostRecentListPnl.patient
Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsAsTablePnl.patient
Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsByBatteryPnl.patient
Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsByDayPnl.patient
......@@ -537,6 +540,7 @@ Gnumed.wxpython.patient" class="py-name" href="Gnumed.business.gmArriba-pysrc.ht
Gnumed.wxpython.gmEMRBrowser.cEMRTree.patient
Gnumed.wxpython.gmFormWidgets.cReceiverSelectionDlg.patient
Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsAsListPnl.patient
Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsAsMostRecentListPnl.patient
Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsAsTablePnl.patient
Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsByBatteryPnl.patient
Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsByDayPnl.patient
......@@ -617,6 +621,7 @@ Gnumed.wxpython.gmDermTool.DermToolDialog.close" class="py-name" href="Gnumed.bu
Gnumed.wxpython.gmEMRBrowser.cEMRTree.patient
Gnumed.wxpython.gmFormWidgets.cReceiverSelectionDlg.patient
Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsAsListPnl.patient
Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsAsMostRecentListPnl.patient
Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsAsTablePnl.patient
Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsByBatteryPnl.patient
Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsByDayPnl.patient
......@@ -630,6 +635,7 @@ Gnumed.wxpython.patient" class="py-name" href="Gnumed.business.gmArriba-pysrc.ht
Gnumed.wxpython.gmEMRBrowser.cEMRTree.patient
Gnumed.wxpython.gmFormWidgets.cReceiverSelectionDlg.patient
Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsAsListPnl.patient
Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsAsMostRecentListPnl.patient
Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsAsTablePnl.patient
Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsByBatteryPnl.patient
Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsByDayPnl.patient
......@@ -1034,6 +1040,7 @@ Gnumed.wxpython.gmPatSearchWidgets.set_active_patient" class="py-name" href="Gnu
Gnumed.wxpython.gmEMRBrowser.cEMRTree.patient
Gnumed.wxpython.gmFormWidgets.cReceiverSelectionDlg.patient
Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsAsListPnl.patient
Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsAsMostRecentListPnl.patient
Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsAsTablePnl.patient
Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsByBatteryPnl.patient
Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsByDayPnl.patient
......@@ -1065,6 +1072,7 @@ Gnumed.timelinelib.plugin.plugins.texttransformers.plaintexttohtml.PlainTextToHt
Gnumed.wxpython.gmEMRBrowser.cEMRTree.patient
Gnumed.wxpython.gmFormWidgets.cReceiverSelectionDlg.patient
Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsAsListPnl.patient
Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsAsMostRecentListPnl.patient
Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsAsTablePnl.patient
Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsByBatteryPnl.patient
Gnumed.wxpython.gmMeasurementWidgets.cMeasurementsByDayPnl.patient
......@@ -1115,7 +1123,7 @@ expandto(location.href);
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