debian/changelog

-hhsuite (3.0~beta3+dfsg-2) UNRELEASED; urgency=medium
+hhsuite (3.0~beta3+dfsg-2) unstable; urgency=medium
 
-  * Team upload.
   * Install context_data.crf (Thanks for the patch to Andrius Merkys
     <andrius.merkys@gmail.com>)
     Closes: #918765
@@ -10,8 +9,11 @@ hhsuite (3.0~beta3+dfsg-2) UNRELEASED; urgency=medium
   * Secure URI in copyright format
   * Remove trailing whitespace in debian/copyright
   * Do not parse d/changelog
+  * Add versioned (Build-)Depends: ffindex
+    (>= 0.9.9.7.soedinglab+git20171201.74550c8)
+  * Adapt doc-base file to debhelper 11 location
 
- -- Andreas Tille <tille@debian.org>  Wed, 09 Jan 2019 08:43:24 +0100
+ -- Andreas Tille <tille@debian.org>  Wed, 09 Jan 2019 17:36:27 +0100
 
 hhsuite (3.0~beta3+dfsg-1) unstable; urgency=medium
 

debian/control

@@ -6,7 +6,7 @@ Uploaders: Laszlo Kajan <lkajan@debian.org>,
 Section: science
 Priority: optional
 Build-Depends: debhelper (>= 11~),
-               libffindex0-dev (>= 0.9.9.7+soedinglab),
+               libffindex0-dev (>= 0.9.9.7.soedinglab+git20171201.74550c8),
                cmake,
                texlive-latex-base,
                texlive-latex-recommended,
@@ -21,7 +21,7 @@ Package: hhsuite
 Architecture: amd64
 Depends: ${shlibs:Depends},
          ${misc:Depends},
-         ffindex,
+         ffindex (>= 0.9.9.7.soedinglab+git20171201.74550c8),
          hhsuite-data (= ${source:Version}),
          python
 Breaks: hhsuite-data (<= 2.0.16-1)

debian/hhsuite-doc.doc-base

@@ -5,4 +5,4 @@ Abstract: HH-suite for sensitive sequence searching based on HMM-HMM alignment.
 Section: Science/Biology
 
 Format: PDF
-Files: /usr/share/doc/hhsuite-doc/hhsuite-userguide.pdf.gz
+Files: /usr/share/doc/hhsuite/hhsuite-userguide.pdf.gz