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debian/changelog
View file @ 393bb35d
hilive (1.1-3) unstable; urgency=medium
* Fix watch file
* Fix build with gcc9
Closes: #925714
* debhelper-compat 12
* Standards-Version: 4.4.0
* Trim trailing whitespace.
-- Andreas Tille <tille@debian.org> Sat, 17 Aug 2019 20:50:36 +0200
hilive (1.1-2) unstable; urgency=medium
* Fix Homepage
......@@ -54,4 +65,3 @@ hilive (0.0+20150926-1) unstable; urgency=medium
* Initial release (Closes: #832950)
-- Andreas Tille <tille@debian.org> Sat, 30 Jul 2016 21:42:48 +0200
debian/control
View file @ 393bb35d
......@@ -3,7 +3,7 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.
Uploaders: Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper (>= 11~),
Build-Depends: debhelper-compat (= 12),
cmake,
libboost-system-dev,
libboost-filesystem-dev,
......@@ -13,7 +13,7 @@ Build-Depends: debhelper (>= 11~),
zlib1g-dev,
liblz4-dev,
chrpath
Standards-Version: 4.3.0
Standards-Version: 4.4.0
Vcs-Browser: https://salsa.debian.org/med-team/hilive
Vcs-Git: https://salsa.debian.org/med-team/hilive.git
Homepage: https://gitlab.com/SimonHTausch/HiLive
......
debian/patches/use_FindSeQan.patch
View file @ 393bb35d
......@@ -3,15 +3,6 @@ Author: Gert Wollny <gw.fossdev@gmail.com>
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -9,7 +9,7 @@ add_definitions(-DHiLive_VERSION_MAJOR=1
add_definitions(-DHiLive_VERSION_MINOR=1)
# Set flags for compilation
-set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -fPIC -g -pthread -W -Wall -std=gnu++14 -O0")
+#set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -fPIC -g -pthread -W -Wall -std=gnu++14 -O0")
# add the binary tree to the search path for include files
include_directories("${PROJECT_BINARY_DIR}")
@@ -38,8 +38,9 @@ set(CompressionLibs "${ZLIB_LIBRARIES};l
#############################
### setup seqan libraries ### needs to be done AFTER searching for Zlib
......
debian/watch
View file @ 393bb35d
version=4
opts="filenamemangle=s/@ANY_VERSION@\/.*\.tar\.gz/HiLive-$1\.tar\.gz/g,repacksuffix=+dfsg,dversionmangle=s/\+dfsg//g,repack,compression=xz" \
https://gitlab.com/SimonHTausch/HiLive/tags?sort=updated_desc .*/repository/v@ANY_VERSION@/archive\.tar\.gz
https://gitlab.com/SimonHTausch/HiLive/tags?sort=updated_desc .*/archive/v@ANY_VERSION@/HiLive-v.*\.tar\.gz