debian/changelog

-hinge (0.5.0-4) UNRELEASED; urgency=medium
+hinge (0.5.0-4) unstable; urgency=medium
 
   * Team upload.
+
+  [ Andreas Tille ]
   * debhelper 11
   * Point Vcs fields to salsa.debian.org
   * Standards-Version: 4.2.1
 
- -- Andreas Tille <tille@debian.org>  Fri, 28 Sep 2018 09:18:45 +0200
+  [ Michael R. Crusoe ]
+  * Remove trailing whitespace in debian/copyright
+  * Added libspdlog-dev 1:1.3.0 compatibility, Closes: #909763
+  * Standards-Version: 4.3.0, no changes needed
+  * debhelper 12
+
+ -- Michael R. Crusoe <michael.crusoe@gmail.com>  Fri, 18 Jan 2019 11:03:09 -0800
 
 hinge (0.5.0-3) unstable; urgency=low
 

debian/compat

-11
+12

debian/control

@@ -3,7 +3,7 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.
 Uploaders: Afif Elghraoui <afif@debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 11~),
+Build-Depends: debhelper (>= 12~),
                cmake,
                libspdlog-dev,
                libboost-dev,
@@ -24,7 +24,7 @@ Build-Depends: debhelper (>= 11~),
                python-pbcore,
                python-networkx,
                python-matplotlib
-Standards-Version: 4.2.1
+Standards-Version: 4.3.0
 Vcs-Browser: https://salsa.debian.org/med-team/hinge
 Vcs-Git: https://salsa.debian.org/med-team/hinge.git
 Homepage: https://github.com/HingeAssembler/HINGE

debian/copyright

@@ -14,14 +14,14 @@ License: BSD-3-Clause/HINGE
 
 Files:
 	src/include/paf.h
-	src/include/paf.c
+	src/lib/paf.c
 	src/include/kseq.h
 Copyright: 2008-2009, 2011 Attractive Chaos <attractor@live.co.uk>
 License: MIT
 
 Files:
 	src/include/align.h
-	src/include/align.c
+	src/lib/align.c
 	src/include/QV.h
 	src/include/DB.h
 Copyright: 2014 Eugene W Myers Jr <gene.myers@gmail.com>

debian/patches/libspdlog-1:1.3.0

+From: Michael R. Crusoe <michael.crusoe@gmail.com>
+Subject: spdlog 1.3.0 compat
+--- hinge.orig/src/filter/filter.cpp
++++ hinge/src/filter/filter.cpp
+@@ -20,6 +20,8 @@
+ 
+ #include "INIReader.h"
+ #include "spdlog/spdlog.h"
++#include "spdlog/sinks/daily_file_sink.h"
++#include "spdlog/sinks/stdout_sinks.h"
+ #include "DB.h"
+ #include "align.h"
+ #include "LAInterface.h"
+--- hinge.orig/src/maximal/maximal.cpp
++++ hinge/src/maximal/maximal.cpp
+@@ -20,6 +20,8 @@
+ 
+ #include "INIReader.h"
+ #include "spdlog/spdlog.h"
++#include "spdlog/sinks/daily_file_sink.h"
++#include "spdlog/sinks/stdout_sinks.h"
+ #include "DB.h"
+ #include "align.h"
+ #include "LAInterface.h"
+--- hinge.orig/src/consensus/draft.cpp
++++ hinge/src/consensus/draft.cpp
+@@ -12,6 +12,8 @@
+ #include <glob.h>
+ 
+ #include "spdlog/spdlog.h"
++#include "spdlog/sinks/daily_file_sink.h"
++#include "spdlog/sinks/stdout_sinks.h"
+ #include "cmdline.h"
+ #include "INIReader.h"
+ #include "DB.h"
+--- hinge.orig/src/layout/hinging.cpp
++++ hinge/src/layout/hinging.cpp
+@@ -13,6 +13,8 @@
+ 
+ 
+ #include "spdlog/spdlog.h"
++#include "spdlog/sinks/daily_file_sink.h"
++#include "spdlog/sinks/stdout_sinks.h"
+ #include "cmdline.h"
+ #include "INIReader.h"
+ #include "DB.h"

debian/patches/series

 external-spdlog.patch
 libspdlog-14.0.patch
+libspdlog-1:1.3.0

debian/rules

 #!/usr/bin/make -f
 #export DH_VERBOSE = 1
 
+include /usr/share/dpkg/default.mk
+export DEB_BUILD_MAINT_OPTIONS=hardening=+all
+
 %:
-	dh $@ --buildsystem=cmake
+	dh $@
 
 override_dh_installexamples:
 	dh_installexamples