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aligner_driver.cpp Loading commit data...
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aligner_seed_policy.cpp Loading commit data...
aligner_seed_policy.h Loading commit data...
aligner_sw.cpp Loading commit data...
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aligner_sw_common.h Loading commit data...
aligner_sw_driver.cpp Loading commit data...
aligner_sw_driver.h Loading commit data...
aligner_sw_nuc.h Loading commit data...
aligner_swsse.cpp Loading commit data...
aligner_swsse.h Loading commit data...
aligner_swsse_ee_i16.cpp Loading commit data...
aligner_swsse_ee_u8.cpp Loading commit data...
aligner_swsse_loc_i16.cpp Loading commit data...
aligner_swsse_loc_u8.cpp Loading commit data...
aln_sink.cpp Loading commit data...
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alphabet.cpp Loading commit data...
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banded.cpp Loading commit data...
banded.h Loading commit data...
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bitpack.h Loading commit data...
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ds.h Loading commit data...
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endian_swap.h Loading commit data...
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extract_splice_sites.py Loading commit data...
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hisat2_inspect.cpp Loading commit data...
hisat2_main.cpp Loading commit data...
hisat2_simulate_reads.py Loading commit data...
hisat_bp.cpp Loading commit data...
hisatgenotype.py Loading commit data...
hisatgenotype_build_genome.py Loading commit data...
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read.h Loading commit data...
read_qseq.cpp Loading commit data...
ref_coord.cpp Loading commit data...
ref_coord.h Loading commit data...
ref_read.cpp Loading commit data...
ref_read.h Loading commit data...
reference.cpp Loading commit data...
reference.h Loading commit data...
sam.h Loading commit data...
scoring.cpp Loading commit data...
scoring.h Loading commit data...
search_globals.h Loading commit data...
sequence_io.h Loading commit data...
shmem.cpp Loading commit data...
shmem.h Loading commit data...
simple_func.cpp Loading commit data...
simple_func.h Loading commit data...
splice_site.cpp Loading commit data...
splice_site.h Loading commit data...
splice_site_mem.h Loading commit data...
splice_site_new.cpp Loading commit data...
spliced_aligner.h Loading commit data...
sse_util.cpp Loading commit data...
sse_util.h Loading commit data...
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tinythread.h Loading commit data...
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