Loading debian/changelog +3 −5 Original line number Diff line number Diff line hisat2 (2.1.0-3) unstable; urgency=medium [ Steffen Moeller ] * Separated series of .py scripts and modules into separate python3-hisat2 package. hisat2 (2.1.0-2nopython3hisat2) unstable; urgency=medium [ Saira Hussain ] * Add autopkgtest Loading @@ -12,6 +8,8 @@ hisat2 (2.1.0-3) unstable; urgency=medium * Recommends: bcftools, samtools [ Michael R. Crusoe ] * Skip the new python3-hisat2 package while we wait for 2.1.0-3 to go through the NEW queue. * Include SIMD everywhere headers and enable building on all architectures. * debhelper-compat 12 * Remove trailing whitespace in debian/control Loading debian/control +22 −22 Original line number Diff line number Diff line Loading @@ -34,25 +34,25 @@ Description: graph-based alignment of short nucleotide reads to many genomes accurate alignment of sequencing reads. This new indexing scheme is called a Hierarchical Graph FM index (HGFM). Package: python3-hisat2 Section: python Architecture: all Depends: ${misc:Depends}, hisat2, python3 Description: Python scripts accompanying hisat2 HISAT2 is a fast and sensitive alignment program for mapping next- generation sequencing reads (both DNA and RNA) to a population of human genomes (as well as against a single reference genome). Based on an extension of BWT for graphs a graph FM index (GFM) was designed and implementd. In addition to using one global GFM index that represents a population of human genomes, HISAT2 uses a large set of small GFM indexes that collectively cover the whole genome (each index representing a genomic region of 56 Kbp, with 55,000 indexes needed to cover the human population). These small indexes (called local indexes), combined with several alignment strategies, enable rapid and accurate alignment of sequencing reads. This new indexing scheme is called a Hierarchical Graph FM index (HGFM). . This package provides a serires of platform-independent scripts that are typically expected to be co-installed with the hisat2 binary. # Package: python3-hisat2 # Section: python # Architecture: all # Depends: ${misc:Depends}, # hisat2, # python3 # Description: Python scripts accompanying hisat2 # HISAT2 is a fast and sensitive alignment program for mapping next- # generation sequencing reads (both DNA and RNA) to a population of human # genomes (as well as against a single reference genome). Based on an # extension of BWT for graphs a graph FM index (GFM) was designed and # implementd. In addition to using one global GFM index that represents a # population of human genomes, HISAT2 uses a large set of small GFM # indexes that collectively cover the whole genome (each index # representing a genomic region of 56 Kbp, with 55,000 indexes needed to # cover the human population). These small indexes (called local indexes), # combined with several alignment strategies, enable rapid and accurate # alignment of sequencing reads. This new indexing scheme is called a # Hierarchical Graph FM index (HGFM). # . # This package provides a serires of platform-independent scripts that are # typically expected to be co-installed with the hisat2 binary. Loading
debian/changelog +3 −5 Original line number Diff line number Diff line hisat2 (2.1.0-3) unstable; urgency=medium [ Steffen Moeller ] * Separated series of .py scripts and modules into separate python3-hisat2 package. hisat2 (2.1.0-2nopython3hisat2) unstable; urgency=medium [ Saira Hussain ] * Add autopkgtest Loading @@ -12,6 +8,8 @@ hisat2 (2.1.0-3) unstable; urgency=medium * Recommends: bcftools, samtools [ Michael R. Crusoe ] * Skip the new python3-hisat2 package while we wait for 2.1.0-3 to go through the NEW queue. * Include SIMD everywhere headers and enable building on all architectures. * debhelper-compat 12 * Remove trailing whitespace in debian/control Loading
debian/control +22 −22 Original line number Diff line number Diff line Loading @@ -34,25 +34,25 @@ Description: graph-based alignment of short nucleotide reads to many genomes accurate alignment of sequencing reads. This new indexing scheme is called a Hierarchical Graph FM index (HGFM). Package: python3-hisat2 Section: python Architecture: all Depends: ${misc:Depends}, hisat2, python3 Description: Python scripts accompanying hisat2 HISAT2 is a fast and sensitive alignment program for mapping next- generation sequencing reads (both DNA and RNA) to a population of human genomes (as well as against a single reference genome). Based on an extension of BWT for graphs a graph FM index (GFM) was designed and implementd. In addition to using one global GFM index that represents a population of human genomes, HISAT2 uses a large set of small GFM indexes that collectively cover the whole genome (each index representing a genomic region of 56 Kbp, with 55,000 indexes needed to cover the human population). These small indexes (called local indexes), combined with several alignment strategies, enable rapid and accurate alignment of sequencing reads. This new indexing scheme is called a Hierarchical Graph FM index (HGFM). . This package provides a serires of platform-independent scripts that are typically expected to be co-installed with the hisat2 binary. # Package: python3-hisat2 # Section: python # Architecture: all # Depends: ${misc:Depends}, # hisat2, # python3 # Description: Python scripts accompanying hisat2 # HISAT2 is a fast and sensitive alignment program for mapping next- # generation sequencing reads (both DNA and RNA) to a population of human # genomes (as well as against a single reference genome). Based on an # extension of BWT for graphs a graph FM index (GFM) was designed and # implementd. In addition to using one global GFM index that represents a # population of human genomes, HISAT2 uses a large set of small GFM # indexes that collectively cover the whole genome (each index # representing a genomic region of 56 Kbp, with 55,000 indexes needed to # cover the human population). These small indexes (called local indexes), # combined with several alignment strategies, enable rapid and accurate # alignment of sequencing reads. This new indexing scheme is called a # Hierarchical Graph FM index (HGFM). # . # This package provides a serires of platform-independent scripts that are # typically expected to be co-installed with the hisat2 binary.