Extending support for Python files of hisat2 (8c33f705) · Commits · Debian Med / hisat2

debian/changelog

+5 −0

Original line number	Diff line number	Diff line
		@@ -2,6 +2,11 @@ hisat2 (2.1.0-3) UNRELEASED; urgency=medium

		* Install hisat2_extract_splice_sites.py

		[ Steffen Moeller ]

		* Separated series of .py scripts and modules into separate
		python3-hisat2 package.

		-- Andreas Tille <tille@debian.org> Mon, 25 Mar 2019 11:35:33 +0100

		hisat2 (2.1.0-2) unstable; urgency=medium

debian/control

+23 −2

Original line number	Diff line number	Diff line
		@@ -16,8 +16,8 @@ Package: hisat2
		Architecture: amd64 kfreebsd-amd64
		Depends: ${shlibs:Depends},
		${misc:Depends},
		${perl:Depends},
		python
		${perl:Depends}
		Recommends: python3-hisat2
		Description: graph-based alignment of short nucleotide reads to many genomes
		HISAT2 is a fast and sensitive alignment program for mapping next-generation
		sequencing reads (both DNA and RNA) to a population of human genomes (as well
		@@ -30,3 +30,24 @@ Description: graph-based alignment of short nucleotide reads to many genomes
		indexes), combined with several alignment strategies, enable rapid and
		accurate alignment of sequencing reads. This new indexing scheme is called a
		Hierarchical Graph FM index (HGFM).

		Package: python3-hisat2
		Architecture: all
		Depends: ${misc:Depends},
		hisat2,
		python
		Description: Python scripts accompanying hisat2
		HISAT2 is a fast and sensitive alignment program for mapping next-generation
		sequencing reads (both DNA and RNA) to a population of human genomes (as well
		as against a single reference genome). Based on an extension of BWT for graphs
		a graph FM index (GFM) was designed and implementd. In addition to using
		one global GFM index that represents a population of human genomes, HISAT2
		uses a large set of small GFM indexes that collectively cover the whole genome
		(each index representing a genomic region of 56 Kbp, with 55,000 indexes
		needed to cover the human population). These small indexes (called local
		indexes), combined with several alignment strategies, enable rapid and
		accurate alignment of sequencing reads. This new indexing scheme is called a
		Hierarchical Graph FM index (HGFM).
		.
		This package provides a serires of platform-independent scripts that are typically
		expected to be co-installed with the hisat2 binary.

debian/install→debian/hisat2.install

+0 −1

Original line number	Diff line number	Diff line
		hisat2 /usr/bin/
		hisat2_extract_splice_sites /usr/bin
		hisat2-build /usr/bin/
		hisat2-build-s /usr/bin/
		hisat2-build-l /usr/bin/