Verified Commit 27ce1de6 authored by Michael R. Crusoe's avatar Michael R. Crusoe 🏳️‍🌈
Browse files

move hmmc2 out of /usr/bin/

parent 62d55c06

debian/clean

0 → 100644
+1 −0
Original line number Diff line number Diff line 
debian/test_log

debian/hmmer.install

+0 −1
Original line number Diff line number Diff line 
usr/bin

usr/share/man
 
src/hmmc2 /usr/bin/

debian/patches/series

+1 −0
Original line number Diff line number Diff line
@@ -3,3 +3,4 @@ use_debian_packaged_libdivsufsort.patch 
verbose-easel

hardening

spelling

skip_threads_check

debian/patches/skip_threads_check

0 → 100644
+19 −0
Original line number Diff line number Diff line 
--- hmmer.orig/testsuite/i19-hmmpgmd-ga.pl

+++ hmmer/testsuite/i19-hmmpgmd-ga.pl

@@ -53,11 +53,11 @@

 # if not found, threads are not enabled and this

 # test would fail, but we return ok status 0 because

 # we don't want the full testsuite to fail.

-$have_threads = `cat $builddir/src/p7_config.h | grep "^#define HMMER_THREADS"`;

-if($have_threads eq "") { 

-    printf("HMMER_THREADS not defined in p7_config.h\n"); 

-    exit 0;

-}

+#$have_threads = `cat $builddir/src/p7_config.h | grep "^#define HMMER_THREADS"`;

+#if($have_threads eq "") { 

+#    printf("HMMER_THREADS not defined in p7_config.h\n"); 

+#    exit 0;

+#}

 

 

 # Verify that the wport and cport are CLOSED - we don't want to

debian/rules

+7 −1
Original line number Diff line number Diff line
@@ -37,7 +37,8 @@ override_dh_auto_configure: 


override_dh_auto_test:

ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))

	export V=VERBOSE ; make check -j$(shell nproc)

	export V=VERBOSE ; make check -j$(shell nproc) | tee debian/test_log

	if tail -n 6 debian/test_log | head -n 1 | grep -q FAILED ; then false ; fi

endif



override_dh_auto_build:
@@ -54,6 +55,11 @@ override_dh_auto_clean: 
override_dh_compress:

	dh_compress -Xtutorial/



override_dh_auto_install:

	dh_auto_install

	mkdir -p $(CURDIR)/debian/$(DEB_SOURCE)/usr/lib/${DEB_HOST_MULTIARCH}/hmmer/

	cp src/hmmc2 $(CURDIR)/debian/$(DEB_SOURCE)/usr/lib/${DEB_HOST_MULTIARCH}/hmmer/



override_dh_installexamples:

	dh_installexamples

	mkdir -p $(sampledir)/src/impl