debian/changelog

@@ -14,6 +14,12 @@ hmmer (3.2.1+dfsg-2) UNRELEASED; urgency=medium
      system to check requirements before to try to build. Unsupported architectures
      will fail gracefully with an explicite message.
 
+  [ Steffen Moeller ]
+  * Cleaning autogenerated Makefiles
+  * Added ref to conda
+  * Standards-Version: 4.4.0
+  * Introducing Link-Time-Optimization
+
  -- Andrius Merkys <andrius.merkys@gmail.com>  Wed, 13 Mar 2019 11:06:20 -0400
 
 hmmer (3.2.1+dfsg-1) unstable; urgency=medium

debian/control

@@ -5,7 +5,7 @@ Section: science
 Priority: optional
 Build-Depends: debhelper (>= 11~),
                libdivsufsort-dev
-Standards-Version: 4.2.0
+Standards-Version: 4.4.0
 Vcs-Browser: https://salsa.debian.org/med-team/hmmer
 Vcs-Git: https://salsa.debian.org/med-team/hmmer.git
 Homepage: http://hmmer.org/

debian/rules

@@ -7,6 +7,11 @@ export DEB_BUILD_MAINT_OPTIONS = hardening=+all
 
 include /usr/share/dpkg/default.mk
 
+ifeq (,$(filter nolto,$(DEB_BUILD_OPTIONS)))
+export LDFLAGS=-flto
+export CFLAGS=-flto
+endif
+
 sampledir:=$(CURDIR)/debian/$(DEB_SOURCE)-examples/usr/share/doc/$(DEB_SOURCE)/examples
 
 %:
@@ -40,6 +45,8 @@ override_dh_auto_clean:
 	rm -f testsuite/esltmp*
 	rm -f easel/testsuite/esltmp*
 	rm -f tutorial/MADE1.hmm.h3?
+	rm -f config.log config.status
+	find . -name Makefile -delete
 
 override_dh_compress:
 	dh_compress -Xtutorial/