remove a test failing no debian servers, needing ip/host resolution

htsjdk (2.16.1+dfsg-3) unstable; urgency=medium

  * Fix FTBS on debian test servers due to ip/name resolution

    Remove related test. Closes: #913839 

 -- Olivier Sallou <osallou@debian.org>  Fri, 16 Nov 2018 11:06:41 +0000

htsjdk (2.16.1+dfsg-2) unstable; urgency=medium

  * Fix FTBS with OpenJDK 11 (Closes: #913566) 

Last-Updated: 2015-01-06

--- a/src/test/java/htsjdk/samtools/seekablestream/SeekableBufferedStreamTest.java

+++ b/src/test/java/htsjdk/samtools/seekablestream/SeekableBufferedStreamTest.java

@@ -42,58 +42,7 @@ public class SeekableBufferedStreamTest

@@ -42,58 +42,7 @@

     private final String BAM_URL_STRING = "http://broadinstitute.github.io/picard/testdata/index_test.bam";

     private static File TestFile = new File("src/test/resources/htsjdk/samtools/seekablestream/megabyteZeros.dat");

     public void testSkip() throws IOException {

--- a/src/test/java/htsjdk/samtools/sra/SRAIndexTest.java

+++ b/src/test/java/htsjdk/samtools/sra/SRAIndexTest.java

@@ -50,85 +50,4 @@ public class SRAIndexTest extends Abstra

@@ -50,85 +50,4 @@

     private static final int LAST_BIN_LEVEL = GenomicIndexUtil.LEVEL_STARTS.length - 1;

     private static final int SRA_BIN_OFFSET = GenomicIndexUtil.LEVEL_STARTS[LAST_BIN_LEVEL];

 }

--- a/src/test/java/htsjdk/samtools/sra/SRATest.java

+++ b/src/test/java/htsjdk/samtools/sra/SRATest.java

@@ -56,378 +56,5 @@ import java.util.TreeSet;

@@ -56,378 +56,5 @@

  */

 public class SRATest extends AbstractSRATest {

 }

--- a/src/test/java/htsjdk/tribble/util/ftp/FTPClientTest.java

+++ b/src/test/java/htsjdk/tribble/util/ftp/FTPClientTest.java

@@ -25,225 +25,4 @@ public class FTPClientTest extends Htsjd

@@ -25,225 +25,4 @@

     static byte[] expectedBytes = "abcdefghijklmnopqrstuvwxyz\n".getBytes();

     FTPClient client;

 }

--- a/src/test/java/htsjdk/tribble/readers/TabixReaderTest.java

+++ b/src/test/java/htsjdk/tribble/readers/TabixReaderTest.java

@@ -135,30 +135,6 @@ public class TabixReaderTest extends Hts

@@ -135,30 +135,6 @@

     }

     /**

      * @throws java.io.IOException

--- a/src/test/java/htsjdk/samtools/cram/ref/EnaRefServiceTest.java

+++ b/src/test/java/htsjdk/samtools/cram/ref/EnaRefServiceTest.java

@@ -15,8 +15,4 @@ public class EnaRefServiceTest extends H

@@ -15,8 +15,4 @@

                 {"0000088cbcebe818eb431d58c908c698"}};

     }

 }

--- a/src/test/java/htsjdk/samtools/BAMRemoteFileTest.java

+++ b/src/test/java/htsjdk/samtools/BAMRemoteFileTest.java

@@ -44,276 +44,7 @@ import static org.testng.Assert.*;

@@ -44,276 +44,7 @@

 public class BAMRemoteFileTest extends HtsjdkTest {

     private final File BAM_INDEX_FILE = new File("src/test/resources/htsjdk/samtools/BAMFileIndexTest/index_test.bam.bai");

     private final File BAM_FILE = new File("src/test/resources/htsjdk/samtools/BAMFileIndexTest/index_test.bam");

 }

--- a/src/test/java/htsjdk/tribble/util/ftp/FTPUtilsTest.java

+++ b/src/test/java/htsjdk/tribble/util/ftp/FTPUtilsTest.java

@@ -15,18 +15,4 @@ import static org.testng.Assert.assertTr

@@ -15,18 +15,4 @@

 */

 public class FTPUtilsTest extends HtsjdkTest {

 }

--- a/src/test/java/htsjdk/samtools/seekablestream/SeekableFTPStreamTest.java

+++ b/src/test/java/htsjdk/samtools/seekablestream/SeekableFTPStreamTest.java

@@ -40,67 +40,6 @@ import java.net.URL;

@@ -40,67 +40,6 @@

 public class SeekableFTPStreamTest extends HtsjdkTest {

 }

--- a/src/test/java/htsjdk/tribble/util/ParsingUtilsTest.java

+++ b/src/test/java/htsjdk/tribble/util/ParsingUtilsTest.java

@@ -153,67 +153,12 @@ public class ParsingUtilsTest extends Ht

@@ -153,67 +153,12 @@

         tstExists(file.toUri().toString(), false);

     }

 }

--- a/src/test/java/htsjdk/tribble/AbstractFeatureReaderTest.java

+++ b/src/test/java/htsjdk/tribble/AbstractFeatureReaderTest.java

@@ -52,54 +52,6 @@ public class AbstractFeatureReaderTest e

@@ -52,54 +52,6 @@

     //wrapper which skips the first byte of a file and leaves the rest unchanged

     private static final Function<SeekableByteChannel, SeekableByteChannel> WRAPPER = SkippingByteChannel::new;

     @DataProvider(name = "vcfFileAndWrapperCombinations")

     private static Object[][] vcfFileAndWrapperCombinations(){

--- a/src/test/java/htsjdk/variant/PrintVariantsExampleTest.java

+++ b/src/test/java/htsjdk/variant/PrintVariantsExampleTest.java

@@ -49,10 +49,12 @@

                 tempFile.getAbsolutePath()

         };

         Assert.assertEquals(tempFile.length(), 0);

+        /*

         PrintVariantsExample.main(args);

         Assert.assertNotEquals(tempFile.length(), 0);

         assertFilesEqualSkipHeaders(tempFile, f1);

+        */

     }

     private void assertFilesEqualSkipHeaders(File tempFile, File f1) throws FileNotFoundException {