Skip test requiring http connection

htsjdk (2.16.1+dfsg-1) UNRELEASED; urgency=medium

  [ Andreas Tille ]

  * New upstream version

  * debhelper 11

  * Standards-Version: 4.2.1

  * Skip test requiring http connection

  [ Olivier Sallou ]

  * Skip test requiring ftp connection

 -- Andreas Tille <tille@debian.org>  Mon, 17 Sep 2018 16:01:03 +0200

 -- Andreas Tille <tille@debian.org>  Tue, 18 Sep 2018 11:00:54 +0200

htsjdk (2.14.3+dfsg-3) unstable; urgency=medium

Author: Andreas Tille <tille@debian.org>

Date:   Wed Sep 18 14:28:01 2018 +0200

Description: Skip test requiring http connection

--- a/src/test/java/htsjdk/samtools/util/BlockCompressedInputStreamTest.java

+++ b/src/test/java/htsjdk/samtools/util/BlockCompressedInputStreamTest.java

@@ -149,28 +149,6 @@ public class BlockCompressedInputStreamT

         return linesWritten;

     }

-    @DataProvider(name = "customInflaterInput")

-    public Object[][] customInflateInput() throws IOException {

-        final File tempFile = File.createTempFile("testCustomInflater.", ".bam");

-        tempFile.deleteOnExit();

-        final List<String> linesWritten = writeTempBlockCompressedFileForInflaterTest(tempFile);

-

-        final InflaterFactory countingInflaterFactory = new CountingInflaterFactory();

-

-        return new Object[][]{

-                // set the default InflaterFactory to a CountingInflaterFactory

-                {(CheckedExceptionInputStreamSupplier) () -> new BlockCompressedInputStream(new FileInputStream(tempFile), false), linesWritten, 4, countingInflaterFactory},

-                {(CheckedExceptionInputStreamSupplier) () -> new BlockCompressedInputStream(tempFile), linesWritten, 4, countingInflaterFactory},

-                {(CheckedExceptionInputStreamSupplier) () -> new AsyncBlockCompressedInputStream(tempFile), linesWritten, 4, countingInflaterFactory},

-                {(CheckedExceptionInputStreamSupplier) () -> new BlockCompressedInputStream(new URL("http://broadinstitute.github.io/picard/testdata/index_test.bam")), null, 21, countingInflaterFactory},

-                // provide a CountingInflaterFactory explicitly

-                {(CheckedExceptionInputStreamSupplier) () -> new BlockCompressedInputStream(new FileInputStream(tempFile), false, countingInflaterFactory), linesWritten, 4, null},

-                {(CheckedExceptionInputStreamSupplier) () -> new BlockCompressedInputStream(tempFile, countingInflaterFactory), linesWritten, 4, null},

-                {(CheckedExceptionInputStreamSupplier) () -> new AsyncBlockCompressedInputStream(tempFile, countingInflaterFactory), linesWritten, 4, null},

-                {(CheckedExceptionInputStreamSupplier) () -> new BlockCompressedInputStream(new URL("http://broadinstitute.github.io/picard/testdata/index_test.bam"), countingInflaterFactory), null, 21, null}

-        };

-    }

-

     @Test(dataProvider = "customInflaterInput", singleThreaded = true)

     public void testCustomInflater(final CheckedExceptionInputStreamSupplier bcisSupplier,

                                    final List<String> expectedOutput,

70-removesometests-testng.patch

80-2to3.patch

90-disable-testftp.patch

92-disable-testhttp.patch