debian/changelog

@@ -5,11 +5,12 @@ htsjdk (2.16.1+dfsg-1) unstable; urgency=medium
   * debhelper 11
   * Standards-Version: 4.2.1
   * Skip test requiring http connection
+  * d/rules: Respect DEB_BUILD_OPTIONS in override_dh_auto_test
 
   [ Olivier Sallou ]
   * Skip test requiring ftp connection
 
- -- Andreas Tille <tille@debian.org>  Tue, 18 Sep 2018 14:21:42 +0200
+ -- Andreas Tille <tille@debian.org>  Wed, 19 Sep 2018 08:11:13 +0200
 
 htsjdk (2.14.3+dfsg-3) unstable; urgency=medium
 

debian/copyright

@@ -298,7 +298,6 @@ License: MIT
 
 Files: src/test/java/htsjdk/samtools/reference/FastaSequenceFileTest.java
   src/test/java/htsjdk/samtools/reference/FastaSequenceIndexTest.java
-  src/test/java/htsjdk/samtools/reference/IndexedFastaSequenceFileTest.java
   src/test/java/htsjdk/samtools/reference/ReferenceSequenceTests.java
 Copyright: 2009-2016, The Broad Institute
 License: Expat

debian/rules

@@ -15,8 +15,10 @@ override_dh_auto_build:
 	dh_auto_build -- jar javadoc
 
 override_dh_auto_test:
+ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
 	# testng bug 895886: testng: jcommander classes not found
 	dh_auto_build -- test
+endif
 
 override_jh_installlibs:
 	jh_installlibs --version-strip='[+]dfsg[.0-9]*'