i386 works! (75fe8867) · Commits · Debian Med / htslib

debian/changelog

+6 −0

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		htslib (1.9-12) unstable; urgency=medium

		* Fix for the autopkgtest on i386 means we can re-enable it! (Closes: #942580)

		-- Michael R. Crusoe <michael.crusoe@gmail.com> Mon, 09 Dec 2019 19:06:02 +0100

		htslib (1.9-11) unstable; urgency=medium

		* Install README at request of upstream

+3 −3

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		@@ -19,7 +19,7 @@ Vcs-Git: https://salsa.debian.org/med-team/htslib.git
		Homepage: https://github.com/samtools/htslib

		Package: libhts2
		Architecture: any-amd64 arm64 armel armhf mips mips64el mipsel ppc64el s390x alpha hppa ia64 m68k powerpc powerpcspe ppc64 riscv64 sh4 sparc64 x32
		Architecture: any
		Multi-Arch: same
		Section: libs
		Depends: ${misc:Depends},
		@@ -39,7 +39,7 @@ Description: C library for high-throughput sequencing data formats
		new index and then for the old if the new index is absent.

		Package: libhts-dev
		Architecture: any-amd64 arm64 armel armhf mips mips64el mipsel ppc64el s390x alpha hppa ia64 m68k powerpc powerpcspe ppc64 riscv64 sh4 sparc64 x32
		Architecture: any
		Multi-Arch: same
		Section: libdevel
		Depends: libhts2 (= ${binary:Version}),
		@@ -99,7 +99,7 @@ Description: Test data for HTSlib
		This package contains test files and scripts for the HTSlib.

		Package: tabix
		Architecture: any-amd64 arm64 armel armhf mips mips64el mipsel ppc64el s390x alpha hppa ia64 m68k powerpc powerpcspe ppc64 riscv64 sh4 sparc64 x32
		Architecture: any
		Depends: ${misc:Depends},
		${shlibs:Depends}
		Description: generic indexer for TAB-delimited genome position files

+11 −4

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		@@ -4,16 +4,23 @@ set -e
		pkg="htslib"

		if [ "$AUTOPKGTEST_TMP" = "" ] ; then
		AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
		AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
		fi

		cp -aL /usr/share/${pkg}-test/* $AUTOPKGTEST_TMP
		cp -aL /usr/share/${pkg}-test/* "$AUTOPKGTEST_TMP"

		cd $AUTOPKGTEST_TMP
		cd "$AUTOPKGTEST_TMP"

		sed -i 's#\$(HTSPREFIX)#/usr/include/#g' htslib_vars.mk
		sed -i 's#\$(HTSLIB)#/usr/include/#g' htslib.mk

		CFLAGS="-O2 -fno-strict-aliasing -fno-code-hoisting" make -e check
		CFLAGS="-O2 -fno-strict-aliasing -fno-code-hoisting"

		if grep sse /proc/cpuinfo > /dev/null; then
		CFLAGS+=" -msse -mfpmath=sse"
		fi
		export CFLAGS

		make -e check

		echo "PASS"