Commit beef2a3a authored by Michael R. Crusoe's avatar Michael R. Crusoe 🏳️‍🌈
Browse files

New upstream version 1.10.2

parent 581cbb1d

NEWS

+6 −2
Original line number Diff line number Diff line 
Noteworthy changes in release a.b

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Noteworthy changes in release 1.10.2 (19th December 2019)

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~



This is a release fix that corrects minor inconsistencies discovered in

previous deliverables.





Noteworthy changes in release 1.10.1 (17th December 2019)

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

bgzip.1

+1 −1
Original line number Diff line number Diff line 
.TH bgzip 1 "6 December 2019" "htslib-1.10" "Bioinformatics tools"

.TH bgzip 1 "19 December 2019" "htslib-1.10.2" "Bioinformatics tools"

.SH NAME

.PP

bgzip \- Block compression/decompression utility

configure

+9 −9
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#! /bin/sh

# Guess values for system-dependent variables and create Makefiles.

# Generated by GNU Autoconf 2.68 for HTSlib 1.10.1.

# Generated by GNU Autoconf 2.68 for HTSlib 1.10.2.

#

# Report bugs to <samtools-help@lists.sourceforge.net>.

#
@@ -565,8 +565,8 @@ MAKEFLAGS= 
# Identity of this package.

PACKAGE_NAME='HTSlib'

PACKAGE_TARNAME='htslib'

PACKAGE_VERSION='1.10.1'

PACKAGE_STRING='HTSlib 1.10.1'

PACKAGE_VERSION='1.10.2'

PACKAGE_STRING='HTSlib 1.10.2'

PACKAGE_BUGREPORT='samtools-help@lists.sourceforge.net'

PACKAGE_URL='http://www.htslib.org/'
@@ -1245,7 +1245,7 @@ if test "$ac_init_help" = "long"; then 
  # Omit some internal or obsolete options to make the list less imposing.

  # This message is too long to be a string in the A/UX 3.1 sh.

  cat <<_ACEOF

\`configure' configures HTSlib 1.10.1 to adapt to many kinds of systems.

\`configure' configures HTSlib 1.10.2 to adapt to many kinds of systems.



Usage: $0 [OPTION]... [VAR=VALUE]...
@@ -1306,7 +1306,7 @@ fi 


if test -n "$ac_init_help"; then

  case $ac_init_help in

     short | recursive ) echo "Configuration of HTSlib 1.10.1:";;

     short | recursive ) echo "Configuration of HTSlib 1.10.2:";;

   esac

  cat <<\_ACEOF
@@ -1413,7 +1413,7 @@ fi 
test -n "$ac_init_help" && exit $ac_status

if $ac_init_version; then

  cat <<\_ACEOF

HTSlib configure 1.10.1

HTSlib configure 1.10.2

generated by GNU Autoconf 2.68



Copyright (C) 2010 Free Software Foundation, Inc.
@@ -1742,7 +1742,7 @@ cat >config.log <<_ACEOF 
This file contains any messages produced by compilers while

running configure, to aid debugging if configure makes a mistake.



It was created by HTSlib $as_me 1.10.1, which was

It was created by HTSlib $as_me 1.10.2, which was

generated by GNU Autoconf 2.68.  Invocation command line was



  $ $0 $@
@@ -5804,7 +5804,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1 
# report actual input values of CONFIG_FILES etc. instead of their

# values after options handling.

ac_log="

This file was extended by HTSlib $as_me 1.10.1, which was

This file was extended by HTSlib $as_me 1.10.2, which was

generated by GNU Autoconf 2.68.  Invocation command line was



  CONFIG_FILES    = $CONFIG_FILES
@@ -5867,7 +5867,7 @@ _ACEOF 
cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1

ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"

ac_cs_version="\\

HTSlib config.status 1.10.1

HTSlib config.status 1.10.2

configured by $0, generated by GNU Autoconf 2.68,

  with options \\"\$ac_cs_config\\"

htsfile.1

+1 −1
Original line number Diff line number Diff line 
.TH htsfile 1 "6 December 2019" "htslib-1.10" "Bioinformatics tools"

.TH htsfile 1 "19 December 2019" "htslib-1.10.2" "Bioinformatics tools"

.SH NAME

htsfile \- identify high-throughput sequencing data files

.\"

htslib-s3-plugin.7

+1 −1
Original line number Diff line number Diff line 
.TH htslib-s3-plugin 7 "6 December 2019" "htslib-1.10" "Bioinformatics tools"

.TH htslib-s3-plugin 7 "19 December 2019" "htslib-1.10.2" "Bioinformatics tools"

.SH NAME

s3 plugin \- htslib AWS S3 plugin

.\"