debian/changelog

-igdiscover (0.11-1) UNRELEASED; urgency=medium
+igdiscover (0.11-2) unstable; urgency=medium
+
+  * Introduced patch for compatibility with later versions
+    of cutadapt - upstream has it already in their master branch.
+
+ -- Steffen Moeller <moeller@debian.org>  Fri, 02 Aug 2019 00:55:02 +0200
+
+igdiscover (0.11-1) unstable; urgency=medium
 
   * Initial release (Closes: #919718)
 

debian/control

@@ -38,9 +38,8 @@ Depends: ${python3:Depends},
          python3-cutadapt,
          python3-scipy (>=0.16.1),
          python3-xopen (>=0.3.2),
+         python3-seaborn (>=0.9),
          python3-ruamel.yaml
-Recommends: python3-seaborn (>=0.8.1),
-            python3-matplotlib
 Suggests: snakemake,
           igdiscover-doc
 Description: analyzes antibody repertoires to find new V genes

debian/patches/minoverlap.patch

+Index: igdiscover/igdiscover/utils.py
+===================================================================
+--- igdiscover.orig/igdiscover/utils.py
++++ igdiscover/igdiscover/utils.py
+@@ -330,8 +330,7 @@ def find_overlap(s, t, min_overlap=1):
+ 	>>> find_overlap('ABC', 'X') is None
+ 	True
+ 	"""
+-	aligner = Aligner(s, max_error_rate=0)
+-	aligner.min_overlap = min_overlap
++	aligner = Aligner(s, max_error_rate=0, min_overlap=min_overlap)
+ 	result = aligner.locate(t)
+ 	if result is None:
+ 		return None

debian/patches/series

+minoverlap.patch