debian/changelog

@@ -13,9 +13,17 @@ igv (2.4.14+dfsg-1) UNRELEASED; urgency=medium
 
   [ Olivier Sallou]
   * d/patches/fix_gradle.patch: adapt build to Debian
-    // TODO there is still an issue with batik:
-       if defined, there are some conflicts
-       for other libs, they are found but marked as not visible....
+
+
+  * TODO there is still an issue with batik:
+     - if defined, there are some conflicts
+       (see https://stackoverflow.com/questions/42358084/package-conflicts-with-automatic-modules-in-java-9)
+       where some batik share some package names.
+     - for javafx libs, they are found but marked as not visible.... though
+       should be seen as unnamed modules.
+       javafx libs should be declared as modules with exported packages but
+       needs lib refactoring or we should find a way to put them as "standard"
+       libs and not modules (but how?)
 
  -- Andreas Tille <tille@debian.org>  Mon, 01 Oct 2018 21:14:39 +0200
 

debian/patches/fix_gradle.patch

@@ -80,7 +80,7 @@ Forwarded: no
      requires htsjdk;
      requires java.datatransfer;
      requires java.desktop;
-@@ -107,15 +107,15 @@
+@@ -107,15 +107,10 @@
      requires java.sql;
      requires java.xml;
      requires java.xml.bind;
@@ -89,11 +89,6 @@ Forwarded: no
 -    requires javafx.fxml;
 -    requires javafx.graphics;
 -    requires javafx.swing;
-+    requires javafx.baseEmpty;
-+    requires javafx.controlsEmpty;
-+    requires javafx.fxmlEmpty;
-+    requires javafx.graphicsEmpty;
-+    requires javafx.swingEmpty;
      requires jdk.xml.dom;
 -    requires jfreechart;
 +    requires jfreechart.debian;