debian/changelog

@@ -13,8 +13,9 @@ igv (2.4.14+dfsg-1) UNRELEASED; urgency=medium
 
   [ Olivier Sallou]
   * d/patches/fix_gradle.patch: adapt build to Debian
-    // TODO there is still an issue with log4j, Logger class is not found
-       though modules and libraries are loaded in classpath
+    // TODO there is still an issue with batik:
+       if defined, there are some conflicts
+       for other libs, they are found but marked as not visible....
 
  -- Andreas Tille <tille@debian.org>  Mon, 01 Oct 2018 21:14:39 +0200
 

debian/patches/fix_gradle.patch

@@ -34,10 +34,17 @@ Forwarded: no
  sourceSets {
      main {
          java {
-@@ -45,6 +54,20 @@
+@@ -45,6 +54,27 @@
  dependencies {
      // Use the newer JIDE lib for Java 9 builds
      compile fileTree(dir: 'lib', include: '*.jar', exclude: 'jide-oss-3.5.5.jar') + fileTree(dir: 'lib_java9', include: '*.jar')
++    compile files ("/usr/share/maven-repo/org/openjfx/javafx-graphics/debian/javafx-graphics-debian-linux.jar")
++    compile files ("/usr/share/maven-repo/org/openjfx/javafx-controls/debian/javafx-controls-debian-linux.jar")
++    compile files ("/usr/share/maven-repo/org/openjfx/javafx-base/debian/javafx-base-debian-linux.jar")
++    compile files ("/usr/share/maven-repo/org/openjfx/javafx-swing/debian/javafx-swing-debian-linux.jar")
++    compile files ("/usr/share/maven-repo/org/openjfx/javafx-fxml/debian/javafx-fxml-debian-linux.jar")
++    //compile "org.apache.xmlgraphics:batik-dom:debian"
++    //compile "org.apache.xmlgraphics:batik-svggen:debian"
 +    compile "com.google.guava:guava:debian"
 +    compile "commons-io:commons-io:debian"
 +    compile "org.apache.commons:commons-math:debian"