snR75.sto 17.3 KB
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# STOCKHOLM 1.0

#=GF AC   RF01185
#=GF ID   snR75
#=GF DE   Small nucleolar RNA snR75
#=GF AU   Wilkinson A
#=GF SE   Predicted; WAR; Wilkinson A
#=GF SS   Predicted; WAR; Wilkinson A
#=GF GA   35.00
#=GF TC   38.64
#=GF NC   33.63
#=GF TP   Gene; snRNA; snoRNA; CD-box;
#=GF BM   cmbuild  -F CM SEED; cmcalibrate --mpi -s 1 CM
#=GF BM   cmsearch  -Z 169604 -E 1000000  --toponly  CM SEQDB
#=GF DR   snornadb; snR75
#=GF DR   SO:0001263 SO:ncRNA_gene
#=GF DR   GO:0006396 GO:RNA processing
#=GF DR   GO:0005730 GO:nucleolus
#=GF WK   http://en.wikipedia.org/wiki/SnoRNA
#=GF SQ   62

AATT01000026.1/6566-6482                   UC..A...AAAUGA.GGAAAC...GAUGACGAGUCAGACGA.........
AAGI01000315.1/11447-11360                 UG..G...AGAUGAUGCGACUUCAGAUGACGAGUCUGACGG.........
AAXI01000054.1/31430-31511                 AA..A...UGAUGA....ACACUUGAUGACGAGUCCGAUGG.........
AACD01000097.1/11630-11717                 CU..C...ACAUGAUGAUCUUCUAGAUGACGAGUCUUAUUU.........
AAKE03000005.1/1118422-1118509             AC..A...CUGUGAUGAUUCCCUAGAUGACGAGUCUUAUUC.........
ABAS01000006.1/940284-940196               GU..U...ACAUGAUGAUUGCUUAGAUGACGAGUCUUAUGC.........
AAJN01000109.1/73745-73659                 CC..A...CAAUGAUGAUCUCCUAGAUGACGAGUCUUAUUC.........
AAIH02000128.1/1199-1286                   CU..C...ACAUGAUGAUUUCCUAGAUGACGAGUCUUAUUC.........
AM270078.1/67439-67352                     AU..U...AGAGGAUGAUUCCCUAGAUGACGAGUCUUAUUC.........
AAKD03000029.1/281090-281175               CC..G...UGAUGA...UUCCCUAGAUGACGAGUCUUAUUC.........
ABAR01000009.1/661755-661844               GU..U...ACAUGAUGAUCCCCUAGAUGACGAGUCUUAUAC.........
AM920437.1/1346884-1346970                 CU..A...UGAUGA.UACCAUUUAGAUGACGAGUCUGAUUC.........
ABBT01000198.1/255809-255896               CU..A...UGAUGA...UUCCCUAGAUGACGAGUCUUAUUC.........
ACBU01001064.1/83137-83226                 CU..A...UGAUGA...UCCCCUAGAUGACGAGUCUUAUUC.........
AAJI01001102.1/179871-179781               CU..A...UGAUGA...UUCCCUAGAUGACGAGUCUUAUUC.........
ABRJ01000399.1/35593-35507                 CU..A...UGAUGA...UUCCCUAGAUGACGAGUCUUAUUC.........
ABVF01000212.1/14233-14148                 UU..G...UGAUGA....CAUCUUGAUGACGAGUCUUAUUC.........
ABWI01000681.1/3384-3300                   AU..G...UGAUGA....CAUCUUGAUGACGAGUCUUAUUC.........
AARE01002242.1/721-809                     UC..A...UGAUGA.UUUCCUUUAGAUGACGAGUCUUAUAC.........
AAIW01000358.1/17398-17311                 UU..U...AUGUGAUGAUCUCUUAGAUGACGAGUCCUAUACGAG....UA
AATX01000061.1/19122-19208                 UC..C...UCAUGAUGAUCUCUUAGAUGACGAGUCCUAUUCG.......A
ABBB01000034.1/251365-251282               UC..A...UGAUGA...UCUCUUAGAUGACGAGUCCUAUUCG.......A
ABKH01000207.1/32876-32965                 AC..A...UGAUGA...ACUCCUAGAUGACGAGUCUUAUCC.........
ABHV01000190.1/63334-63422                 AC..A...UGAUGA...ACCCCUAGAUGACGAGUCUUAUCC.........
ABSB01000187.1/24596-24676                 CC..G...UGAUGA.GA.AAUUUAGAUGACGAGUCUGAUCC.........
AAID01002090.1/2659-2574                   UU..A...UGAUGA.GCAUUUUUAGAUGACGAGUCUGAUUG.........
ABDF01000131.1/55503-55589                 GC..A...UCAUGUGAUGAUUUUAGAUGACGAGUCCUAUUC.........
ABDG01000079.1/224030-223949               AU..G...UGAUGA....UUUUUAGAUGACGAGUCCUAUUC.........
AACM02000292.1/22980-23063                 UC..C...UGAUGA...ACAAUCAGAUGACGAGUCUUAUCC.........
AAIM02000027.1/316344-316260               UC..C...UGAUGA.ACCCUU.UAGAUGACGAGUCUUAUAC.........
AAXH01000193.1/8098-8014                   UC..C...UGAUGA.ACCCUU.UAGAUGACGAGUCUUAUAC.........
ABJE01000834.1/14883-14801                 UC..C...UGAUGA.....ACACAGAUGACGAGUCCUACAC.........
AACU02000567.1/2153-2234                   UC..C...UGAUGA.....UUCUAGAUGACGAGUCUUAUUC.........
AAFU01001217.1/1599-1511                   UU..U...UUCUGUGAUGACUCUAGAUGACGAGUCUGAUUC.........
CU633895.1/1470274-1470357                 UU..A...UGAUGA.....CUCUAGAUGACGAGUCCUAUAC.........
EU780931.1/3-91                            .C.CA...UGAUGA..UCCCUUUAGAUGACGAGUCUUAUCG.........
CR382127.1/989516-989433                   AU..A...UGAUGA...UUCCCUAGAUGACGAGUCAGAAUG.........
AAFT01000027.1/99620-99532                 AU..U...ACAUGAUGAUUACUUAGAUGACGAGUCAGAAUC.........
CR382139.2/220568-220656                   AA..A...AGAUGA..UCUCCUUAGAUGACGAGUCAGAAUU.........
AE016815.4/489702-489785                   CU..G...UGAUGA..UCUCCAUAGAUGACGAGUCUGAUUC.........
CR382124.1/957132-957216                   UCGAA...UGAUGAGCU.UUUAUAGAUGACGAGUCUGACUA.........
AADM01000093.1/238419-238513               UU..ACAGUGAUGA..UAUCCUUAGAUGACGAGUCUGAUUC.........
AACE03000004.1/1106384-1106474             AA..G...UGAUGA.UUACCC.UAGAUGACGAGUCUGAUCC.........
AAPO01000086.1/18114-18023                 UU..G...AAGUGAUGAUUACCUAGAUGACGAGUCAGAACC.........
CR380959.2/770723-770635                   ..CUA...UGAUGA.ACCCUUUUAGAUGACGAGUCUGAAUA.........
AACF01000013.1/100529-100445               UCCAA...UGAUGAGACCUUU.UAGAUGACGAGUCUGAUCU.........
AAFM01000013.1/140949-141035               AC..A...AGAUGA...UCUCUAAGAUGACGAGUCAGAUCC.........
AAVQ01000001.1/1458293-1458382             UA.GA...UGAUGA..UUCUUUUAGAUGACGAGUCAGAAUU.........
FN392322.1/110356-110270                   AA..A...AGAUGA..UACUCUUAGAUGACGAGUCAGAUUU.........
AACA01000204.1/7585-7505                   UU..A...UGAUGAGAUAUUUAUAGAUGACGAGUCUGAUCU.........
AJ010798.1/1-83                            UU..A...UGAUGAGAUAUUUAUAGAUGACGAGUCUGAUCA.........
AAZN01000292.1/2990-2905                   UU..UA.GUGAUGA.AUACUUAUAGAUGACGAGUCUGAUCUA........
AAFN01000078.1/31724-31812                 AC..G...UGAUGA...UUACCUAGAUGACGAGUCAGAACU.........
AACQ01000006.1/123917-124007               AU..G...UGAUGA..UUUUACUAGAUGACGAGUCAGAACC.........
CABE01000024.1/563849-563942               AA..G...UGAUGAUCUUUAUCUAGAUGACGAGUCAGAAUCU........
ABHY02000006.1/989997-990077               UU..C...CAAGGA.GGAACUAUAGAUGACGAGUCUGAAUA.........
CU329670.1/527190-527270                   UC..U...CAAUGAGGAAUAAUUAGAUGACGAGUCUGAUUC.........
AATM01000016.1/35659-35741                 UU..UG.CCAAUGAGGAAUUACUAGAUGACGAGUCUGAUG..........
AACS01000061.1/96121-96229                 CA..A...AGAUGA..AUUCUUUAGAUGACGAGUCUGAGCUAUGAUGGUC
ABFE01001339.1/82173-82065                 UU..A...UGAUGA.G.AUAUUUAGAUGACGAGUCUGAACCAUGAUAGGC
AADS01000356.1/83584-83477                 AA..G...GGAUGA...UCUUUUAGAUGACGAGUCUGAAUACGUC.GGCG
AACW02000245.1/159431-159514               UU..A...UGAUGA...ACUCUUAGAUGACGAGUCUGACGA.........
#=GC SS_cons                               ..................................................
#=GC RF                                    uu..a...uGAUGA.gauuuuuUAGAUGACGAGUCUgAUuc.........

AATT01000026.1/6566-6482                   .GU...UUCUCGAU...............GCUG.CA..U.AAUCUUU...
AAGI01000315.1/11447-11360                 .GCU..CGCCCUGU...............GACG.AC..C.UCAUUUA...
AAXI01000054.1/31430-31511                 .GUU..CGCCCGGU...............GAAG.AC..U.UAAAUCA...
AACD01000097.1/11630-11717                 .GAG..UUUUCAAU...............GCAG.AC..A.ACA.UCU...
AAKE03000005.1/1118422-1118509             .GAG..UUAUCGAU...............GCAG.AC..A.ACAUUCU...
ABAS01000006.1/940284-940196               .GAG..UUUUCGAU...............GCAG.AC..A.ACCUUCU...
AAJN01000109.1/73745-73659                 .GAG..UUAUC..................GAUG.CA..G.ACACUAU...
AAIH02000128.1/1199-1286                   .GAG..UUAUCGAU...............GCUG.AC..A.CCA.UCU...
AM270078.1/67439-67352                     .GAG..UUAUCGAU...............GCAG.AC..A.ACAUCUU...
AAKD03000029.1/281090-281175               .GAG..UUAUCGAU...............GCAG.AC..A.ACAUCUU...
ABAR01000009.1/661755-661844               .GAG..UUUUCGAU...............GCAG.AC..A.ACCUUUU...
AM920437.1/1346884-1346970                 .GAG..UUUUCGAU...............GCUG.AC..A.CAAUCUU...
ABBT01000198.1/255809-255896               .GAG..UUUUCGAU...............GCAG.AUAAA.AAAUUUU...
ACBU01001064.1/83137-83226                 .GAG..UUUUCGAU...............GCAG.AC..A.ACCUAUUUUU
AAJI01001102.1/179871-179781               .GAG..UUUUCGAU...............GCAG.AC..A.AUUUUUU...
ABRJ01000399.1/35593-35507                 .GAG..UUUUCGAU...............GCAG.AC..A.AUUUUCU...
ABVF01000212.1/14233-14148                 .GAA..UUCUCGAU...............GCAG.AC..A.CAAAUAU...
ABWI01000681.1/3384-3300                   .GAA..UUCUCGAU...............GCAG.AC..A.CAAACAU...
AARE01002242.1/721-809                     .GAG..UUUUCGAU...............GCAG.AC..AACAUCUUU...
AAIW01000358.1/17398-17311                 CUCG..AU.....................GCGG.AC..A.CCCUUCU...
AATX01000061.1/19122-19208                 GUAC..UC.....................GAUG.CG.GA.CAACCUU...
ABBB01000034.1/251365-251282               GUAC..UC.....................GAUG.CG.GA.CAACCUU...
ABKH01000207.1/32876-32965                 .GAG..UUUUCGAU...............GCAG.AC..A.CCCUUUU...
ABHV01000190.1/63334-63422                 .GAG..UUUUCGAU...............GCAG.AC..A.ACUUUUU...
ABSB01000187.1/24596-24676                 .GAG..AAAUCGAU...............GUUG.AC..A.AAA.......
AAID01002090.1/2659-2574                   .GAG..UUUUCCAU...............GUUG.AC..A.ACAUCAA...
ABDF01000131.1/55503-55589                 .GGG..UUUCC..................GAUG.AG.GA.CAACAAC...
ABDG01000079.1/224030-223949               .GGG..UUUCC..................GAUG.AG..G.AUACAAU...
AACM02000292.1/22980-23063                 .GAG..UUUUC..................GAUG.CA..G.ACACCCU...
AAIM02000027.1/316344-316260               .GAG..UUUUCGAU...............GCAG.AC..A.CAAUCCU...
AAXH01000193.1/8098-8014                   .GAG..UUUUCGAU...............GCAG.AC..A.CAA..UC...
ABJE01000834.1/14883-14801                 .GGU..UUUACCGA..............UGCGG.AC..A.ACC..UA...
AACU02000567.1/2153-2234                   .GGG..UUUCC..................GAUGCAG..A.CAACAAA...
AAFU01001217.1/1599-1511                   .GGG..AUUCCCGC..............UGAAG.AC..A.AAAACUU...
CU633895.1/1470274-1470357                 .GGG..AUUCCCGA..............UGCGG.AC..A.ACCUAUU...
EU780931.1/3-91                            .GGG..AUUCCCCA..............UGCAG.AC..AACCUUUUU...
CR382127.1/989516-989433                   .GGG..CUUCCCCU..............UGACG.AU..A.CAA..AC...
AAFT01000027.1/99620-99532                 .GGG..AUUCCCGU..............UGACG.AC..A..ACCUUU...
CR382139.2/220568-220656                   .UCG..GGAUUCCCG............UUGAUG.AC..A.ACCUUUU...
AE016815.4/489702-489785                   .GAG..CUUCUC.................GCUG.AA..G.ACACACA...
CR382124.1/957132-957216                   .UUCAGUU.....................GAAG.AC..A.CAACUAU...
AADM01000093.1/238419-238513               .GAG..GUUUUUCUCG...........CUGAAG.AC..A.ACACUUU...
AACE03000004.1/1106384-1106474             .GGG..GUUUUUCCCG...........CUGAAG.AC..A.AACUAAC...
AAPO01000086.1/18114-18023                 .UCG..GGUUUCCCG............UUGAUG.AC..A.ACCUUUU...
CR380959.2/770723-770635                   .GUU..UUUUAUUA..............UGAAG.AC..A.CAUCUAU...
AACF01000013.1/100529-100445               .UUGAAGU.....................GAAG.AC..A.AAUCUAA...
AAFM01000013.1/140949-141035               .GGG..AUACCCGC..............UGAUG.AC..A.ACACUUA...
AAVQ01000001.1/1458293-1458382             .UCG..GGAUACCCG............UUGAUG.AC..A.AAACUUU...
FN392322.1/110356-110270                   CGUG..UUUCACGA..............UGACG.AU..A.CAA..CC...
AACA01000204.1/7585-7505                   .UUC..GU.....................GAAG.AC..A.CAA..CU...
AJ010798.1/1-83                            .UUC..GU.....................GAAG.AC..A.CAACUAU...
AAZN01000292.1/2990-2905                   CUUU..GU.....................GAAG.AC..A.AAACUAU...
AAFN01000078.1/31724-31812                 .UCG..GGUUUCCCG............UUGAUG.AC..A.ACCUUUU...
AACQ01000006.1/123917-124007               .UCG..GGUUUCCCG............UUGAUG.AC..A.AACUUUU...
CABE01000024.1/563849-563942               CGGG..UUUCCCGU..............UGAUG.AC..A.ACUAUUUU..
ABHY02000006.1/989997-990077               .UUU..CU.....U...............GAUG.AA..A.CAGACUC...
CU329670.1/527190-527270                   .AAU..AU.....................GAAG.AA..A.AGACUCU...
AATM01000016.1/35659-35741                 .UCC..AU.....................GACG.AA..A.CGACUCU...
AACS01000061.1/96121-96229                 AGAG..UUUCUCUGGCCUGA..CGGUUCUGACG.AU..A.CAA.UCU...
ABFE01001339.1/82173-82065                 AGAG..UUUCUCUGUCUGUC..UGAACAUGACG.AC..U.CAACUAA...
AADS01000356.1/83584-83477                 UGAG..GUUUCCUCUCGUCGAUCUUCCUUGAUG.AU..A.CAU..CU...
AACW02000245.1/159431-159514               .GUC..AUUCAAU................GUUG.AU..A.AAACUCU...
#=GC SS_cons                               ..................................................
#=GC RF                                    .GaG..uUUuccau...............GAaG.Ac..A.aaAcUuU...

AATT01000026.1/6566-6482                   .UUUUUUA.....UUCAUUCAUGCCAAAACUGAUU
AAGI01000315.1/11447-11360                 .AAAUAU.......CCAUUCAUGCCUUUUCUGAUC
AAXI01000054.1/31430-31511                 .AAAUAU.......CCAUUCAUGUCAA..CUGAUC
AACD01000097.1/11630-11717                 .UUUUUUU.....ACCAUUCAUGCAAA.ACUGACA
AAKE03000005.1/1118422-1118509             .UUUUUU......ACCAUUCAUGCAUU.UCUGACG
ABAS01000006.1/940284-940196               .UUUAAUA.....ACCAUUCAUGCUUU.CCUGAUU
AAJN01000109.1/73745-73659                 CUUUUUUU.....ACCAUUCAUGCAUU.UCUGACA
AAIH02000128.1/1199-1286                   .UUUUUUU.....ACCAUUCAUGCAUU.UCUGACU
AM270078.1/67439-67352                     .UUUUAU......ACCAUUCAUGCAUU.UCUGAAA
AAKD03000029.1/281090-281175               .UUUUUAU.....ACCAUUCAUGCAAA.ACUGACU
ABAR01000009.1/661755-661844               .UUUAAUU....AACCAUUCAUGCUUU.ACUGAAU
AM920437.1/1346884-1346970                 .UUUAAU......ACCAUUCAUGCCUU.UCUGACA
ABBT01000198.1/255809-255896               .UUUUAAU.....ACCAUUCAUGCUUU.UCUGAAA
ACBU01001064.1/83137-83226                 UUAUAAAU.....ACCAUUCAUGCUUU.UCUGAAA
AAJI01001102.1/179871-179781               .UUUUUUUUUAAUACCAUUCAUGCUUU.UCUGAAA
ABRJ01000399.1/35593-35507                 UUUUUAAU.....ACCAUUCAUGCUUU.UCUGAAA
ABVF01000212.1/14233-14148                 .UUCAAAU....AACCAUUCAUGCCAA.ACUGAAC
ABWI01000681.1/3384-3300                   .UUAAAUA.....ACCAUUCAUGCCAA.ACUGAAC
AARE01002242.1/721-809                     .UUUUUAU.....ACCAUUCAUGCAAA.ACUGACA
AAIW01000358.1/17398-17311                 .UAUUUU......ACCAUUCAUGCCUU.UCUGAAA
AATX01000061.1/19122-19208                 .UCUUUUU.....ACCAUUCAUGCAUU.UCUGAAC
ABBB01000034.1/251365-251282               .UCUUUUU.....ACCAUUCAUGCAUU.UCUGAAC
ABKH01000207.1/32876-32965                 .UUUAUAUUA.AUACCAUUCAUGCUUU.UCUGAAA
ABHV01000190.1/63334-63422                 .UUAUAUUA..AUACCAUUCAUGCUUU.UCUGAAA
ABSB01000187.1/24596-24676                 ..AAAAUA.....ACCAUUCAUGCCUU..CUGAAA
AAID01002090.1/2659-2574                   .AAUUAU......ACCAUUCAUGCCUU..CUGAAU
ABDF01000131.1/55503-55589                 .CUAACCU.....ACCAUUCAUGCAUUCCCUGAU.
ABDG01000079.1/224030-223949               .CUUUUUU.....ACCAUUCAUGCAUUUCCUGAU.
AACM02000292.1/22980-23063                 .AUUUACU.....ACCAUUCAUGCAUUCUCUGAAU
AAIM02000027.1/316344-316260               .ACUUUA.......CCAUUCAUGCAUUUCCUGAC.
AAXH01000193.1/8098-8014                   .UUACUUU.....ACCAUUCAUGCAUUUCCUGAC.
ABJE01000834.1/14883-14801                 .UUUUAAU.....ACCAUUCAUGCCUU.ACUGAAC
AACU02000567.1/2153-2234                   .ACUUACU.....ACCAUUCAUGCCUUAACUGAA.
AAFU01001217.1/1599-1511                   .UUAACU......ACCAUUCAUGCCUU.UCUGAUA
CU633895.1/1470274-1470357                 .UUUUAU......ACCAUUCAUGCCUA.UCUGAAA
EU780931.1/3-91                            .UUUUAAU.....ACCAUUCAUGCAUU.UCUGAAA
CR382127.1/989516-989433                   .UUUUAAU.....ACCAUUCAUGCCUU..CUGAAA
AAFT01000027.1/99620-99532                 .UUUAAUU.....ACCAUUCAUGCCUU.UCUGAGU
CR382139.2/220568-220656                   .UUUAAU......ACCAUUCAUGCAAA.UCUGAUA
AE016815.4/489702-489785                   .CACAAUU......CCAUUCAUGCAUU.UCUGAGC
CR382124.1/957132-957216                   .UUUAAU......ACCAUUCAUGCAUU.UCUGACU
AADM01000093.1/238419-238513               .UUUUUUU....UACCAUUCAUGCAUU.UCUGACU
AACE03000004.1/1106384-1106474             .UAAAUAU.....ACCAUUCAUGCAUU.UCUGAUU
AAPO01000086.1/18114-18023                 .UUUUAAU.....ACCAUUCAUGCAUU.UCUGAUU
CR380959.2/770723-770635                   .AAAUUAU.....ACCAUUCAUGCAUU.UCUGAGU
AACF01000013.1/100529-100445               .UUUAAU......ACCAUUCAUGCCUU.UCUGAGA
AAFM01000013.1/140949-141035               .UUUUAAU.....ACCAUUCAUGCCUU.UCUGAUA
AAVQ01000001.1/1458293-1458382             .UUUAAU......ACCAUUCAUGCUUU.UCUGAUU
FN392322.1/110356-110270                   .UUUUUUU.....ACCAUUCAUGCAUU.UCUGAUA
AACA01000204.1/7585-7505                   .AUUAAUU.....ACCAUUCAUGCCUU.UCUGAAA
AJ010798.1/1-83                            .UAAAAUU.....ACCAUUCAUGCCUU.UCUGAAG
AAZN01000292.1/2990-2905                   .UUUUAAU.....UCCAUUCAUGCAUU.UCUGAAA
AAFN01000078.1/31724-31812                 .UUUAAUU.....ACCAUUCAUGCAUU.UCUGAUC
AACQ01000006.1/123917-124007               AUUUAAUU.....ACCAUUCAUGCAUU.UCUGAUC
CABE01000024.1/563849-563942               UAUUAAUU.....ACCAUUCAUGCAUU.UCUGAUU
ABHY02000006.1/989997-990077               .UUUAAUU......CCAUUCAUGCUUA..CUGAGG
CU329670.1/527190-527270                   .UAAAAUU......CCAUUCAUGCUAA..CUGAGA
AATM01000016.1/35659-35741                 .AUAAAUU......CCAUUCAUGCCUU.ACUGAGG
AACS01000061.1/96121-96229                 .UUAAUUU.....ACCAUUCAUGCUUU.UCUGAAC
ABFE01001339.1/82173-82065                 .AAUUAU......ACCAUUCAUGCUUU.UCUGAUU
AADS01000356.1/83584-83477                 .UUUAAAU.....ACCAUUCAUGCAUA.UCUGACU
AACW02000245.1/159431-159514               .UUUAAU......ACCAUUCAUGCUUU.ACUGAAA
#=GC SS_cons                               ...................................
#=GC RF                                    .UUUuAuU.....ACCAUUCAUGCaUU.UCUGAaa
//