Commit 3fce8ef5 authored by Andreas Tille's avatar Andreas Tille

Thanks again to Yavor Doganov <yavor@gnu.org> for another very helpful hint

parent a9a0482f
......@@ -139,3 +139,33 @@ Description: Fix configure.ac to enable autoreconf
fi
# 5. Checks for libraries
@@ -731,6 +731,29 @@ AC_CONFIG_FILES([easel/testsuite/Makefil
AC_CONFIG_FILES([easel/Makefile])
AC_CONFIG_FILES([easel/documentation/Makefile])
+
+AH_TOP([
+/* RAMLIMIT (in MB) defines how much memory we're
+ * allowed to expend on alignment algorithms without
+ * switching to more efficient memory forms - e.g.
+ * in smallcyk.c
+ */
+#ifndef RAMLIMIT
+#define RAMLIMIT 0
+#endif
+
+/* SRE_CONLEVEL will prob move to squid somewhere.
+ * Set to 1 to activate contract checking, during debugging.
+ */
+#define SRE_CONLEVEL 1
+#if (SRE_CONLEVEL >= 1)
+#include <assert.h>
+#endif
+
+#define CMSEQDBENV "BLASTDB"
+#define CMDBENV "RFAMDB"
+])
+
################################################################
# 13. AC_OUTPUT
################################################################
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