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Commits (6)
ipig (0.0.r5-3) UNRELEASED; urgency=medium
ipig (0.0.r5-3) unstable; urgency=medium
[ Steffen Moeller ]
* debian/upstream/metadata: Added refs to registries
-- Steffen Moeller <moeller@debian.org> Thu, 03 Aug 2017 13:37:12 +0200
[ Andreas Tille ]
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.1.4
* Java Policy conform versioning of JAR
-- Andreas Tille <tille@debian.org> Wed, 04 Jul 2018 10:24:12 +0200
ipig (0.0.r5-2) unstable; urgency=medium
......
Source: ipig
Section: science
Priority: optional
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Build-Depends: debhelper (>= 9),
javahelper (>=0.25),
Section: science
Priority: optional
Build-Depends: debhelper (>= 11~),
javahelper,
default-jdk,
ant,
libcommons-compress-java,
libcommons-net-java,
libjdom1-java,
libxerces2-java
Standards-Version: 3.9.5
Vcs-Browser: http://anonscm.debian.org/gitweb/?p=debian-med/ipig.git
Vcs-Git: git://anonscm.debian.org/debian-med/ipig.git
Standards-Version: 4.1.4
Vcs-Browser: https://salsa.debian.org/med-team/ipig
Vcs-Git: https://salsa.debian.org/med-team/ipig.git
Homepage: http://sourceforge.net/projects/ipig/
Package: ipig
Architecture: any
Depends: ${misc:Depends},
${java:Depends},
Description: integrating PSMs into genome browser visualisations
${java:Depends}
Description: integrating PSMs into genome browser visualisations
iPiG targets the integration of peptide spectrum matches (PSMs) from
mass spectrometry (MS) peptide identifications into genomic
visualisations provided by genome browser such as the UCSC genome
......
......@@ -2,7 +2,8 @@
# DH_VERBOSE := 1
SRC_VERSION =$(shell dpkg-parsechangelog | sed -ne 's/^Version: \(\([0-9]\+\):\)\?\(.*\)-.*/\3/p')
include /usr/share/dpkg/default.mk
#jarversion=$(shell echo $(DEB_VERSION_UPSTREAM) | sed 's/r//')
export JAVA_HOME=/usr/lib/jvm/default-java
......@@ -22,6 +23,11 @@ override_dh_install:
override_dh_auto_build:
cp debian/build.xml build.xml
sed -i "s/DEBVERSION/"$(SRC_VERSION)"/g" build.xml
# sed -i "s/DEBVERSION/$(jarversion)/g" build.xml
sed -i "s/DEBVERSION/$(DEB_VERSION_UPSTREAM)/g" build.xml
dh_auto_build
#override_jh_installlibs:
# jh_installlibs
# mv debian/$(DEB_SOURCE)/usr/share/java/iPiG-$(DEB_VERSION_UPSTREAM).jar debian/$(DEB_SOURCE)/usr/share/java/iPiG-$(jarversion).jar
# ln -sf iPiG-$(jarversion).jar debian/$(DEB_SOURCE)/usr/share/java/iPiG.jar