Loading .gitignore 0 → 100644 +15 −0 Original line number Diff line number Diff line Makefile.in aclocal.m4 autom4te.cache config.h.in configure depcomp install-sh missing compile config.guess config.h.in~ config.sub ltmain.sh *_cmdline.hpp test-driver .gitmod 0 → 100644 +1 −0 Original line number Diff line number Diff line develop .travis.yml 0 → 100644 +11 −0 Original line number Diff line number Diff line language: cpp before_install: - mkdir -p ~/bin - curl -L -o ~/bin/yaggo https://github.com/gmarcais/yaggo/releases/download/v1.5.9/yaggo - chmod a+rx ~/bin/yaggo script: autoreconf -i && ./configure YAGGO=~/bin/yaggo && make && make check addons: artifacts: paths: - $(git ls-files -o | grep '\.log$' | tr "\n" ":") s3_region: "us-east-1" CHANGES 0 → 100644 +13 −0 Original line number Diff line number Diff line Version 1.1 =========== * Read input from pipes. For example, to count DNA from zipped files, run: % gunzip -c *.fa.gz | jellyfish [options] /dev/fd/0 * Support fasta and fastq formats. * Support for counting 'q-mers', as defined by the Quake error correcting software (http://www.cbcb.umd.edu/software/quake/). * New dump subcommands which replaces 'stats -f' and 'stats -c'. HalfLICENSE 0 → 100644 +34 −0 Original line number Diff line number Diff line Copyright (c) 2006, Industrial Light & Magic, a division of Lucasfilm Entertainment Company Ltd. Portions contributed and copyright held by others as indicated. All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: * Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. * Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. * Neither the name of Industrial Light & Magic nor the names of any other contributors to this software may be used to endorse or promote products derived from this software without specific prior written permission. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. Loading
.gitignore 0 → 100644 +15 −0 Original line number Diff line number Diff line Makefile.in aclocal.m4 autom4te.cache config.h.in configure depcomp install-sh missing compile config.guess config.h.in~ config.sub ltmain.sh *_cmdline.hpp test-driver
.travis.yml 0 → 100644 +11 −0 Original line number Diff line number Diff line language: cpp before_install: - mkdir -p ~/bin - curl -L -o ~/bin/yaggo https://github.com/gmarcais/yaggo/releases/download/v1.5.9/yaggo - chmod a+rx ~/bin/yaggo script: autoreconf -i && ./configure YAGGO=~/bin/yaggo && make && make check addons: artifacts: paths: - $(git ls-files -o | grep '\.log$' | tr "\n" ":") s3_region: "us-east-1"
CHANGES 0 → 100644 +13 −0 Original line number Diff line number Diff line Version 1.1 =========== * Read input from pipes. For example, to count DNA from zipped files, run: % gunzip -c *.fa.gz | jellyfish [options] /dev/fd/0 * Support fasta and fastq formats. * Support for counting 'q-mers', as defined by the Quake error correcting software (http://www.cbcb.umd.edu/software/quake/). * New dump subcommands which replaces 'stats -f' and 'stats -c'.
HalfLICENSE 0 → 100644 +34 −0 Original line number Diff line number Diff line Copyright (c) 2006, Industrial Light & Magic, a division of Lucasfilm Entertainment Company Ltd. Portions contributed and copyright held by others as indicated. All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: * Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. * Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. * Neither the name of Industrial Light & Magic nor the names of any other contributors to this software may be used to endorse or promote products derived from this software without specific prior written permission. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
