debian/changelog

+jellyfish (2.2.8-3) unstable; urgency=medium
+
+  * Build and install fastq2sam, which fixes Debci tests
+  * Incorporates suggestions from the Multiarch hinter.
+
+ -- Michael R. Crusoe <michael.crusoe@gmail.com>  Fri, 16 Mar 2018 10:57:09 -0700
+
 jellyfish (2.2.8-2) unstable; urgency=medium
 
   * Add the missing small_mers.sh file, courtesy upstream.

debian/control

@@ -45,6 +45,7 @@ Description: count k-mers in DNA sequences
 
 Package: libjellyfish-2.0-2
 Architecture: any
+Multi-Arch: same
 Section: libs
 Depends: ${shlibs:Depends},
          ${misc:Depends}
@@ -68,6 +69,7 @@ Description: count k-mers in DNA sequences (dynamic library of jellyfish)
 
 Package: libjellyfish-2.0-dev
 Architecture: any
+Multi-Arch: same
 Section: libdevel
 Depends: ${misc:Depends},
          libjellyfish-2.0-2 (= ${binary:Version})
@@ -114,6 +116,7 @@ Description: count k-mers in DNA sequences (Python bindings of jellyfish)
 
 Package: libjellyfish-perl
 Architecture: any
+Multi-Arch: same
 Section: perl
 Depends: ${perl:Depends},
          ${misc:Depends},

debian/jellyfish-examples.install

 bin/.libs/generate_sequence	usr/lib/jellyfish/bin
 bin/.libs/test_all		usr/lib/jellyfish/bin
+bin/.libs/fastq2sam		usr/lib/jellyfish/bin

debian/rules

@@ -63,7 +63,7 @@ override_dh_clean:
 override_dh_auto_build:
 	mkdir -p debian/tmp_save_tests
 	cp -a tests/* debian/tmp_save_tests
-	dh_auto_build --no-parallel -- all bin/generate_sequence bin/test_all
+	dh_auto_build --no-parallel -- all bin/generate_sequence bin/test_all bin/fastq2sam
 #	cd doc ;  RUBYLIB=$PWD PATH=$PATH:../bin make clean all ; cd ..
 #	broken