fix package name for alter-lib usage

jmodeltest (2.1.10+dfsg-7) UNRELEASED; urgency=medium

  * alter-sequence-alignment now has two JARs - add alter-lib.jar to manifest

    d/patches/fix_alter-lib.patch

    Closes: #906371

  * Standards-Version: 4.2.1

Subject: alter-lib makes use of different package name

Description: the use of alter-lib.jar needs to modify the package name

 on parser and converter call

Author: Olivier Sallou <osallou@debian.org>

Last-Updated: 2018-12-17

Forwarded: no

--- a/src/main/java/es/uvigo/darwin/jmodeltest/ModelTestService.java

+++ b/src/main/java/es/uvigo/darwin/jmodeltest/ModelTestService.java

@@ -25,10 +25,10 @@

 import java.io.IOException;

 import java.io.PrintStream;

-import parser.ParseException;

-import converter.Converter;

-import converter.DefaultFactory;

-import converter.Factory;

+import es.uvigo.ei.sing.alter.parser.ParseException;

+import es.uvigo.ei.sing.alter.converter.Converter;

+import es.uvigo.ei.sing.alter.converter.DefaultFactory;

+import es.uvigo.ei.sing.alter.converter.Factory;

 import es.uvigo.darwin.jmodeltest.exception.AlignmentParseException;

 import es.uvigo.darwin.jmodeltest.io.NullPrintStream;

 import es.uvigo.darwin.jmodeltest.selection.AIC;

replace_natbib_bst_by_plainnat.patch

remove_BrowserLauncher_reference.patch

latex_encoding.patch

fix_alter-lib.patch