debian/changelog

+kalign (1:2.03+20110620-4) unstable; urgency=medium
+
+  * propagate CC from ./configure to make (Thanks for the patch to Helmut Grohne
+    <helmut@subdivi.de>)
+    Closes: #890256
+  * Standards-Version: 4.1.3
+  * debhelper 11
+
+ -- Andreas Tille <tille@debian.org>  Mon, 12 Feb 2018 16:39:29 +0100
+
 kalign (1:2.03+20110620-3) unstable; urgency=low
 
   * Team upload

debian/compat

-9
+11

debian/control

@@ -4,8 +4,8 @@ Uploaders: Charles Plessy <plessy@debian.org>,
            Andreas Tille <tille@debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 9)
-Standards-Version: 3.9.8
+Build-Depends: debhelper (>= 11~)
+Standards-Version: 4.1.3
 Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/kalign.git
 Vcs-Git: https://anonscm.debian.org/git/debian-med/kalign.git
 Homepage: http://msa.sbc.su.se/

debian/patches/cross.patch

+Author: Helmut Grohne <helmut@subdivi.de>
+Last-Update: Mon, 12 Feb 2018 15:51:16 +0100
+Bug-Debian: https://bugs.debian.org/890256
+Description: propagate CC from ./configure to make
+
+--- a/Makefile.in
++++ b/Makefile.in
+@@ -1,6 +1,6 @@
+ PREFIX			= /usr/local/bin
+ TEST				= test/
+-CC					= gcc  
++CC					= @CC@
+ CFLAGS			+= -O9  -Wall 
+ DEBUGFLAGS		= -ggdb -Wall 
+ 

debian/patches/series

 hardening.patch
+cross.patch