Add test

Notes on how this package can be tested.

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This package can be tested by running the provided test:

This package can be tested by installing the package kallisto-examples

and running the provided test:

    sh run-unit-test

Depends: ${shlibs:Depends},

         ${misc:Depends}

Description: near-optimal RNA-Seq quantification

 Kallisto is a program for quantifying abundances of transcripts from RNA-

 Seq data, or more generally of target sequences using high-throughput

 Kallisto is a program for quantifying abundances of transcripts from

 RNA-Seq data, or more generally of target sequences using high-throughput

 sequencing reads. It is based on the novel idea of pseudoalignment for

 rapidly determining the compatibility of reads with targets, without the

 need for alignment. On benchmarks with standard RNA-Seq data, kallisto

 quantification tools. In fact, because the pseudoalignment procedure is

 robust to errors in the reads, in many benchmarks kallisto significantly

 outperforms existing tools.

Package: kallisto-examples

Architecture: all

Depends: ${misc:Depends}

Recommends: kallisto

Suggests: snakemake

Description: near-optimal RNA-Seq quantification (example data)

 Kallisto is a program for quantifying abundances of transcripts from

 RNA-Seq data, or more generally of target sequences using high-throughput

 sequencing reads. It is based on the novel idea of pseudoalignment for

 rapidly determining the compatibility of reads with targets, without the

 need for alignment. On benchmarks with standard RNA-Seq data, kallisto

 can quantify 30 million human reads in less than 3 minutes on a Mac

 desktop computer using only the read sequences and a transcriptome index

 that itself takes less than 10 minutes to build. Pseudoalignment of

 reads preserves the key information needed for quantification, and

 kallisto is therefore not only fast, but also as accurate than existing

 quantification tools. In fact, because the pseudoalignment procedure is

 robust to errors in the reads, in many benchmarks kallisto significantly

 outperforms existing tools.

 .

 This package contains usage examples which are used in autopkgtest.

debian/tests/run-unit-test

test	usr/share/doc/kallisto

debian/README.test