New upstream version 1.1.1

v 1.1.1:

* fixed download of taxonomy with NCBI taxonomy update est --> gb 

* added --use-wget for downloading of data from NCBI instead of rsync

* updated Copyright and emails 

v1.1:

* added --out-fmt paired and --out-fmt interleaved to allow paired reads

  to be separated when using --[un]classified-out options

set -e

VERSION="1.0"

VERSION="1.1.1"

if [ -z "$1" ] || [ -n "$2" ]

then

#!/bin/bash

# Copyright 2013-2017, Derrick Wood <dwood@cs.jhu.edu>

# Copyright 2013-2019, Derrick Wood, Jennifer Lu <jlu26@jhmi.edu>

#

# This file is part of the Kraken taxonomic sequence classification system.

#

#!/bin/bash

# Copyright 2013-2017, Derrick Wood <dwood@cs.jhu.edu>

# Copyright 2013-2019, Derrick Wood, Jennifer Lu <jlu26@jhmi.edu>

#

# This file is part of the Kraken taxonomic sequence classification system.

#

#!/bin/bash

# Copyright 2013-2015, Derrick Wood <dwood@cs.jhu.edu>

# Copyright 2013-2015, Derrick Wood, Jennifer Lu <jlu26@jhmi.edu>

#

# This file is part of the Kraken taxonomic sequence classification system.

#