Include an autopkgtest

Tests: run-unit-test

Depends: @

Restrictions: allow-stderr

#!/bin/bash

set -e

# Run comparative tests to see if we get an expected default output. Test installed files so no need to move them.

# run_lefse

if [[ $(run_lefse 2>&1) = "usage: run_lefse [-h]"* ]]; then

	echo "run_lefse comparative pass"

else

	echo "run_lefse comparative fail"

	exit 1

fi

# format_input

if [[ $(format_input 2>&1) = "usage: format_input [-h]"* ]]; then

	echo "format_input comparative pass"

else

	echo "format_input comparative fail"

	exit 1

fi 

# lefse2circlader

if [[ $(lefse2circlader -h 2>&1) = "usage: lefse2circlader [-h]"* ]]; then

	echo "lefse2circlader comparative pass"

else

	echo "lefse2circlader comparative fail"

	exit 1

fi

# plot_cladogram

if [[ $(plot_cladogram 2>&1) = "usage: plot_cladogram [-h]"* ]]; then

	echo "plot_cladogram comparative pass"

else

	echo "plot_cladogram comparative fail"

	exit 1

fi

# plot_features

if [[ $(plot_features 2>&1) = "usage: plot_features [-h]"* ]]; then

	echo "plot_features comparative pass"

else

	echo "plot_features comparative fail"

	exit 1

fi

# plo_res

if [[ $(plot_res 2>&1) = "usage: plot_res [-h]"* ]]; then

	echo "plot_res comparative pass"

else

	echo "plot_res comparative fail"

	exit 1

fi

# qiime2lefse

if [[ $(qiime2lefse -h 2>&1) = "usage: qiime2lefse [-h]"* ]]; then

	echo "qiime2lefse comparative pass"

else

	echo "qiime2lefse comparative fail"

	exit 1

fi