Some unit test refinements (6883422d) · Commits · Debian Med / lefse

debian/tests/run-unit-test

+19 −12

Original line number	Diff line number	Diff line
		@@ -4,18 +4,20 @@ set -e
		# Run comparative tests to see if we get an expected default output. Test installed files so no need to move them.

		# run_lefse
		if [[ $(run_lefse 2>&1) = "usage: run_lefse [-h]"* ]]; then
		if [[ $(run_lefse -h 2>&1) = "usage: run_lefse [-h]"* ]]; then
		echo "run_lefse comparative pass"
		else
		echo "run_lefse comparative fail"
		echo "run_lefse comparative fail. Instead, I get:"
		run_lefse -h
		exit 1
		fi

		# format_input
		if [[ $(format_input 2>&1) = "usage: format_input [-h]"* ]]; then
		if [[ $(format_input -h 2>&1) = "usage: format_input [-h]"* ]]; then
		echo "format_input comparative pass"
		else
		echo "format_input comparative fail"
		echo "format_input comparative fail. Instead, I get:"
		format_input -h
		exit 1
		fi

		@@ -23,31 +25,35 @@ fi
		if [[ $(lefse2circlader -h 2>&1) = "usage: lefse2circlader [-h]"* ]]; then
		echo "lefse2circlader comparative pass"
		else
		echo "lefse2circlader comparative fail"
		echo "lefse2circlader comparative fail. Instead, I get:"
		lefse2circlader -h
		exit 1
		fi

		# plot_cladogram
		if [[ $(plot_cladogram 2>&1) = "usage: plot_cladogram [-h]"* ]]; then
		if [[ $(plot_cladogram -h 2>&1) = "usage: plot_cladogram [-h]"* ]]; then
		echo "plot_cladogram comparative pass"
		else
		echo "plot_cladogram comparative fail"
		echo "plot_cladogram comparative fail. Instead, I get:"
		plot_cladogram -h
		exit 1
		fi

		# plot_features
		if [[ $(plot_features 2>&1) = "usage: plot_features [-h]"* ]]; then
		if [[ $(plot_features -h 2>&1) = "usage: plot_features [-h]"* ]]; then
		echo "plot_features comparative pass"
		else
		echo "plot_features comparative fail"
		echo "plot_features comparative fail. Instead, I get:"
		plot_features -h
		exit 1
		fi

		# plo_res
		if [[ $(plot_res 2>&1) = "usage: plot_res [-h]"* ]]; then
		if [[ $(plot_res -h 2>&1) = "usage: plot_res [-h]"* ]]; then
		echo "plot_res comparative pass"
		else
		echo "plot_res comparative fail"
		echo "plot_res comparative fail. Instead, I get:"
		plot_res -h
		exit 1
		fi

		@@ -55,6 +61,7 @@ fi
		if [[ $(qiime2lefse -h 2>&1) = "usage: qiime2lefse [-h]"* ]]; then
		echo "qiime2lefse comparative pass"
		else
		echo "qiime2lefse comparative fail"
		echo "qiime2lefse comparative fail. Instead, I get:"
		qiime2lefse -h
		exit 1
		fi