Skip to content
Commits on Source (6)
Show whitespace changes
Inline Side-by-side
Makefile
View file @ 2812ff18
......@@ -705,7 +705,7 @@ ifeq ($(strip $(CONFIG_MAKEFILE_FOUND)),)
@echo '$(ARBHOME)/$@:1: has been generated.'
@echo 'Please edit $@ to configure your system!'
@echo --------------------------------------------------------------------------------
@false
# @false
else
@echo '$(ARBHOME)/$<:1: is more recent than'
@echo '$(ARBHOME)/$@:1:'
......@@ -805,7 +805,7 @@ check_TOOLS:
"$(LINK_SHARED_LIB)" \
check_ENVIRONMENT : check_PATH check_TOOLS
check_ENVIRONMENT :
@echo "-------------------- Environment [start]"
@echo "ARBHOME='$(ARBHOME)'"
@echo "PATH='$(PATH)'"
......@@ -824,7 +824,7 @@ force_tab_check:
# ---------------------
check_setup: check_ENVIRONMENT check_DEBUG check_ARB_64 check_DEVELOPER check_GCC_VERSION
check_setup: check_ENVIRONMENT check_DEBUG check_ARB_64 check_DEVELOPER
@echo Your setup seems to be ok.
checks: check_setup check_tabs
......@@ -843,64 +843,16 @@ checks: check_setup check_tabs
# when adding new libs here, also add a dependency vs 'links' or 'links_non_perl' in .@DD_links_non_perl
ARCHS = \
$(ARCHS_PT_SERVER) \
AISC/AISC.a \
AISC_MKPTPS/AISC_MKPTPS.a \
ARBDB/libARBDB.a \
CORE/libCORE.a \
ARB_GDE/ARB_GDE.a \
AWT/libAWT.a \
AWTC/AWTC.a \
AWTI/AWTI.a \
CONSENSUS_TREE/CONSENSUS_TREE.a \
CONVERTALN/CONVERTALN.a \
DBSERVER/DBSERVER.a \
DIST/DIST.a \
EDIT4/EDIT4.a \
EISPACK/EISPACK.a \
GDE/GDE.a \
GENOM/GENOM.a \
GENOM_IMPORT/GENOM_IMPORT.a \
GL/GL.a \
ISLAND_HOPPING/ISLAND_HOPPING.a \
MERGE/MERGE.a \
MULTI_PROBE/MULTI_PROBE.a \
NALIGNER/NALIGNER.a \
NAMES/NAMES.a \
NAMES_COM/server.a \
NTREE/NTREE.a \
PARSIMONY/PARSIMONY.a \
PERLTOOLS/PERLTOOLS.a \
PHYLO/PHYLO.a \
PRIMER_DESIGN/PRIMER_DESIGN.a \
PROBE_COM/server.a \
PROBE_DESIGN/PROBE_DESIGN.a \
PROBE_SET/PROBE_SET.a \
READSEQ/READSEQ.a \
RNA3D/RNA3D.a \
RNACMA/RNACMA.a \
SECEDIT/SECEDIT.a \
SEQ_QUALITY/SEQ_QUALITY.a \
SERVERCNTRL/SERVERCNTRL.a \
SL/SL.a \
STAT/STAT.a \
TOOLS/TOOLS.a \
TREEGEN/TREEGEN.a \
UNIT_TESTER/UNIT_TESTER.a \
WETC/WETC.a \
WINDOW/libWINDOW.a \
XML/XML.a \
# -----------------------
# library packets
ARCHS_CLIENT_PROBE = PROBE_COM/client.a PROBE_COM/common.a
ARCHS_CLIENT_NAMES = NAMES_COM/client.a NAMES_COM/common.a
ARCHS_SERVER_PROBE = PROBE_COM/server.a $(ARCHS_CLIENT_PROBE)
ARCHS_SERVER_NAMES = NAMES_COM/server.a $(ARCHS_CLIENT_NAMES)
ARCHS_MAKEBIN = AISC_MKPTPS/AISC_MKPTPS.a AISC/AISC.a
# communication libs need aisc and aisc_mkpts:
......@@ -1291,9 +1243,8 @@ WINDOW/WINDOW.dummy: target_is_missing_lib_prefix
# Additional dependencies for subtargets:
PROBE_COM/PROBE_COM.dummy : comtools
NAMES_COM/NAMES_COM.dummy : comtools
com: PROBE_COM/PROBE_COM.dummy NAMES_COM/NAMES_COM.dummy
com: PROBE_COM/PROBE_COM.dummy
PROBE_COM/server.dummy:
@echo Unwanted request to make target $<
......@@ -1553,18 +1504,15 @@ genheaders: TEMPLATES/TEMPLATES.dummy
clrdotdepends:
-rm PROBE_COM/.depends
-rm NAMES_COM/.depends
-rm PERL2ARB/.depends
comdepends: comtools clrdotdepends
@echo "$(SEP) Partially build com interface"
$(MAKE) PROBE_COM/PROBE_COM.depends NAMES_COM/NAMES_COM.depends
$(MAKE) PROBE_COM/server.depends NAMES_COM/server.depends
$(MAKE) PROBE_COM/PROBE_COM.depends # NAMES_COM/NAMES_COM.depends
$(MAKE) PROBE_COM/server.depends # NAMES_COM/server.depends
depends: genheaders comdepends
@echo "$(SEP) Updating other dependencies"
$(MAKE) $(subst NAMES_COM/server.depends,,$(subst PROBE_COM/server.depends,,$(ARCHS:.a=.depends))) \
HELP_SOURCE/HELP_SOURCE.depends \
SOURCE_TOOLS/COMPILE_COMPAT/COMPILE_COMPAT.depends \
$(MAKE) libdepends
......@@ -1652,8 +1600,8 @@ tags: $(TAG_SOURCE_LISTS)
LINKSTAMP=SOURCE_TOOLS/stamp.generate_all_links
links: checks $(LINKSTAMP) arbmainwrapper
links_no_checks: $(LINKSTAMP) arbmainwrapper
links: checks # $(LINKSTAMP) arbmainwrapper
links_no_checks: # $(LINKSTAMP) arbmainwrapper
forcelinks:
-rm $(LINKSTAMP)
......@@ -1676,7 +1624,7 @@ redo_links: clean_links
#********************************************************************************
header_libs:
$(MAKE) -C HEADERLIBS all
echo "No headerlibs - just create libarb core" # $(MAKE) -C HEADERLIBS all
#********************************************************************************
......@@ -1708,7 +1656,7 @@ endif
binlink:
$(MAKE) -C bin $(BIN_TARGET)
echo "No binaries, build library only" # $(MAKE) -C bin $(BIN_TARGET)
preplib:
(cd lib;$(MAKE) all)
......@@ -1728,7 +1676,7 @@ preplib:
ifeq ($(WITHPERL),1)
links_non_perl: PERLTOOLS/PERLTOOLS.dummy
perltools: links_non_perl
perl: realperl
perl:
else
links_non_perl: links
perl:
......@@ -1744,27 +1692,14 @@ TEST_PERL_SCRIPTS=echo "skipping perl script compilation (when cross-compiling)"
endif
realperl: perltools
(( \
echo "$(SEP) Make PERL2ARB" ; \
$(TIME) $(MAKE) -C PERL2ARB -r -f Makefile.main \
"AUTODEPENDS=1" \
"dflags=$(dflags)" \
"cross_cflags=$(cross_cflags) $(cxxflags) $(dflags)" \
"cross_lflags=$(cross_lflags)" \
"COMPILER_VERSION=$(COMPILER_VERSION)" \
all && \
$(TEST_PERL_SCRIPTS) && \
echo "$(SEP) Make PERL2ARB [done]" ; \
) > PERL2ARB.log 2>&1 && (cat PERL2ARB.log;rm PERL2ARB.log)) || (cat PERL2ARB.log;rm PERL2ARB.log;false)
echo "PERL2ARB is not needed for libarb"
perl_clean:
@$(MAKE) -C PERL2ARB -r -f Makefile.main \
"AUTODEPENDS=0" \
clean
echo "PERL2ARB is not needed for libarb thus nothing to clean"
PERL2ARB/PERL2ARB.clean:
$(MAKE) perl_clean
$(MAKE) -C PERL_SCRIPTS/test clean
# $(MAKE) perl_clean
# $(MAKE) -C PERL_SCRIPTS/test clean
# ---------------------------------------- bindings to script languages
......@@ -1810,7 +1745,7 @@ rmbak:
-exec rm -v {} \;
bin_reinit:
$(MAKE) bin/bin.clean
#$(MAKE) bin/bin.clean
$(MAKE) -C "bin" all
clean_directories:
......@@ -1826,19 +1761,14 @@ objclean:
# bin.clean and HELP_SOURCE.clean interfere
clean3:
$(MAKE) bin/bin.clean
$(MAKE) HELP_SOURCE/HELP_SOURCE.clean
# $(MAKE) bin/bin.clean
# $(MAKE) HELP_SOURCE/HELP_SOURCE.clean
clean2: $(ARCHS:.a=.clean) \
clean3 \
rmbak \
libclean \
objclean \
lib/lib.clean \
GDEHELP/GDEHELP.clean \
HEADERLIBS/HEADERLIBS.clean \
SOURCE_TOOLS/SOURCE_TOOLS.clean \
SOURCE_TOOLS/COMPILE_COMPAT/COMPILE_COMPAT.clean \
UNIT_TESTER/UNIT_TESTER.clean \
TEMPLATES/TEMPLATES.clean \
perl_clean \
......@@ -1847,7 +1777,7 @@ clean2: $(ARCHS:.a=.clean) \
rm -f *.last_gcc *.last_compiler config.makefile.bak
# links are needed for cleanup
clean: redo_links motif_xpm_hack_clean
clean: redo_links
$(MAKE) clean2
$(MAKE) clean_cov_all clean_links
......@@ -1860,8 +1790,6 @@ reloc_clean: links
$(MAKE) \
perl_clean \
GDEHELP/GDEHELP.clean \
HELP_SOURCE/genhelp/genhelp.clean \
bin/bin.clean \
libclean \
objclean
......@@ -1896,7 +1824,7 @@ perl4ever: clean
rebuild: clean
$(MAKE) all
relink: bin/bin.clean libclean
relink: libclean
$(MAKE) build
tarfile: rebuild
......@@ -1979,10 +1907,10 @@ arbapplications: nt pa e4 wetc pt na nal di ph ds wetc cma
arb_external: convert tools gde readseq tg pst xmlin
arb_no_perl: arbapplications help arb_external
arb_no_perl: arbapplications arb_external
arb: motif_xpm_hack
$(MAKE) "WITHPERL=1" perl arb_no_perl
arb:
$(MAKE) "WITHPERL=1" perl # arb_no_perl
motif_xpm_hack:
$(MAKE) -r -C "lib/motifHack" all
......@@ -2121,7 +2049,6 @@ UNITS_TESTED = \
SL/FAST_ALIGNER/FAST_ALIGNER.test \
SL/PRONUC/PRONUC.test \
WINDOW/libWINDOW.test \
HELP_SOURCE/arb_help2xml.test \
CONVERTALN/CONVERTALN.test \
SL/SEQIO/SEQIO.test \
SL/PTCLEAN/PTCLEAN.test \
......@@ -2312,7 +2239,7 @@ post_commit_check:
# --------------------------------------------------------------------------------
build: arb
$(MAKE) binlink preplib compile_compatibility
$(MAKE) db core
all:
@echo "Build time" > $(TIMELOG)
......
PROBE_COM/Makefile
View file @ 2812ff18
......@@ -20,7 +20,11 @@ AISC_COMPILER=../AISC/aisc
AISC_PROTOTYPER=../AISC_MKPTPS/aisc_mkpt
AISC_DEPENDS = $(wildcard AISC/*.pa) $(AISC_COMPILER) $(AISC_PROTOTYPER)
ifeq (,$(wildcard AISC/export2sub))
include ../AISC_COM/AISC/export2sub
else
include AISC/export2sub
endif
$(MAIN): server.a
......@@ -33,7 +37,7 @@ depends:
clean:
@rm -f .depends
@$(MAKE) -r -f AISC/Makefile clean
#@$(MAKE) -r -f AISC/Makefile clean
# DO NOT DELETE
......
SOURCE_TOOLS/build_info.pl
View file @ 2812ff18
......@@ -275,36 +275,6 @@ my $in_SVN = (-d $ARBHOME.'/.svn');
# update revision info?
my ($revision,$is_tag,$branch) = (undef,undef,undef);
if ($in_SVN) {
# in SVN checkout -> update revision info
$revision = getRevision();
($is_tag,$branch) = getBranchOrTag();
# $branch = $RC_BRANCH; # @@@ fake
# $branch = $STABLE_BRANCH; # @@@ fake
# $branch = 'gtk_only'; # @@@ fake
# ($is_tag,$branch) = (1, 'arb-5.20.1'); # @@@ fake
# ($is_tag,$branch) = (1, 'arb-5.19'); # @@@ fake
# ($is_tag,$branch) = (1, 'evalSomething'); # @@@ fake
# ($is_tag,$branch) = (1, 'arb-5.20'); # @@@ fake
# ($is_tag,$branch) = (1, 'arb-5.20-rc1'); # @@@ fake
# ($is_tag,$branch) = (1, 'arb-5.20-rc2'); # @@@ fake
my @svn_revision = (
'#define ARB_SVN_REVISION "'.$revision.'"',
'#define ARB_SVN_BRANCH "'.$branch.'"',
'#define ARB_SVN_BRANCH_IS_TAG '.$is_tag,
);
update($svn_revision_h,@svn_revision);
}
else {
if (not -f $svn_revision_h) {
die "Missing file '$svn_revision_h'";
}
# use revision info as in source tarball
($revision,$is_tag,$branch) = getBranchOrTagFromHeader($svn_revision_h);
}
my $date = `date '+%d.%b.%Y'`;
chomp($date);
......@@ -395,46 +365,6 @@ my $short_version = undef;
my $always_show_revision = 1;
my $orgbranch = $branch; # real branch or branch estimated from tag
if ($is_tag==1) {
if ($branch =~ /^arb-[0-9]+\.[0-9]+/o) {
if ($branch =~ /-rc[0-9]+$/o) { $orgbranch = $RC_BRANCH; }
else { $orgbranch = $STABLE_BRANCH; }
}
else {
$orgbranch = 'unknown';
}
}
if ($orgbranch eq $STABLE_BRANCH or $orgbranch eq $RC_BRANCH) {
$always_show_revision = 0;
$svn_tag = 'arb-'.$version_info{MAJOR}.'.'.$version_info{MINOR};
if ($orgbranch eq $RC_BRANCH) {
$svn_tag .= '-rc'.$version_info{CANDIDATE};
}
else {
if ($version_info{PATCHLEVEL} > 0) { $svn_tag .= '.'.$version_info{PATCHLEVEL}; }
}
$short_version = $svn_tag;
if ($is_tag==1) {
# check real SVN-tag vs generated SVN-tag
if ($branch ne $svn_tag) {
die "Version info and SVN-branch-tag mismatch:\n".
"(version suggests svn-tag = '$svn_tag'\n".
" real svn-tag = '$branch')";
}
}
print "SVN_URL='$ENV{SVN_URL}'\n";
print "SVN_REVISION='$ENV{SVN_REVISION}'\n";
}
elsif ($is_tag==1) {
$short_version = 'arb-special-'.$branch; # use custom tag
}
else {
$short_version = 'arb-devel';
if ($branch ne 'trunk') { $short_version .= '-'.$branch; }
$short_version .= '-'.$version_info{MAJOR}.'.'.$version_info{MINOR};
}
defined $short_version || die "expected known short_version!";
defined $revision || die "expected known revision!";
......
SOURCE_TOOLS/generate_all_links.sh
View file @ 2812ff18
#!/bin/bash
SELF=$ARBHOME/SOURCE_TOOLS/generate_all_links.sh
READLINK=${ARBHOME}/SH/arb_readlink
READLINK=readlink
finderr() {
......@@ -126,7 +126,9 @@ makedir lib/help &&
(test -z $MOTIF_LIBPATH || symlink_file $MOTIF_LIBPATH lib/libXm.so.3) &&
# Links in bin directory
if [ -d bin ] ; then
( cd bin ; make all; cd .. ) &&
fi
# ...COMS
......@@ -146,64 +148,11 @@ symlink_maybe_no_target GENH/aisc.h PROBE_COM/PT_server.h &&
# TEMPLATES directory
symlink_file ../TEMPLATES/arb_algo.h INCLUDE/arb_algo.h &&
symlink_file ../TEMPLATES/arb_backtrace.h INCLUDE/arb_backtrace.h &&
symlink_file ../TEMPLATES/arb_debug.h INCLUDE/arb_debug.h &&
symlink_file ../TEMPLATES/arb_defs.h INCLUDE/arb_defs.h &&
symlink_file ../TEMPLATES/arb_early_check.h INCLUDE/arb_early_check.h &&
symlink_file ../TEMPLATES/arb_error.h INCLUDE/arb_error.h &&
symlink_file ../TEMPLATES/arb_forward_list.h INCLUDE/arb_forward_list.h &&
symlink_file ../TEMPLATES/arb_global_defs.h INCLUDE/arb_global_defs.h &&
symlink_file ../TEMPLATES/arb_simple_assert.h INCLUDE/arb_simple_assert.h &&
symlink_file ../TEMPLATES/arb_sleep.h INCLUDE/arb_sleep.h &&
symlink_file ../TEMPLATES/arb_stdstr.h INCLUDE/arb_stdstr.h &&
symlink_file ../TEMPLATES/arb_str.h INCLUDE/arb_str.h &&
symlink_file ../TEMPLATES/arb_unit_test.h INCLUDE/arb_unit_test.h &&
symlink_file ../TEMPLATES/arb_unordered_map.h INCLUDE/arb_unordered_map.h &&
symlink_file ../TEMPLATES/arb_version.h INCLUDE/arb_version.h &&
symlink_file ../TEMPLATES/arbtools.h INCLUDE/arbtools.h &&
symlink_file ../TEMPLATES/attributes.h INCLUDE/attributes.h &&
symlink_file ../TEMPLATES/bytestring.h INCLUDE/bytestring.h &&
symlink_file ../TEMPLATES/cache.h INCLUDE/cache.h &&
symlink_file ../TEMPLATES/ChecksumCollector.h INCLUDE/ChecksumCollector.h &&
symlink_file ../TEMPLATES/command_output.h INCLUDE/command_output.h &&
symlink_file ../TEMPLATES/config_parser.h INCLUDE/config_parser.h &&
symlink_file ../TEMPLATES/cxxforward.h INCLUDE/cxxforward.h &&
symlink_file ../TEMPLATES/downcast.h INCLUDE/downcast.h &&
symlink_file ../TEMPLATES/dupstr.h INCLUDE/dupstr.h &&
symlink_file ../TEMPLATES/gccver.h INCLUDE/gccver.h &&
symlink_file ../TEMPLATES/malloc.h INCLUDE/malloc.h &&
symlink_file ../TEMPLATES/mode_text.h INCLUDE/mode_text.h &&
symlink_file ../TEMPLATES/output.h INCLUDE/output.h &&
symlink_file ../TEMPLATES/perf_timer.h INCLUDE/perf_timer.h &&
symlink_file ../TEMPLATES/SigHandler.h INCLUDE/SigHandler.h &&
symlink_file ../TEMPLATES/smartptr.h INCLUDE/smartptr.h &&
symlink_file ../TEMPLATES/static_assert.h INCLUDE/static_assert.h &&
symlink_file ../TEMPLATES/SuppressOutput.h INCLUDE/SuppressOutput.h &&
symlink_file ../TEMPLATES/ttypes.h INCLUDE/ttypes.h &&
symlink_file ../TEMPLATES/ut_valgrinded.h INCLUDE/ut_valgrinded.h &&
symlink_file ../TEMPLATES/valgrind.h INCLUDE/valgrind.h &&
symlink_maybe_no_target ../TEMPLATES/arb_build.h INCLUDE/arb_build.h &&
symlink_maybe_no_target ../TEMPLATES/svn_revision.h INCLUDE/svn_revision.h &&
# INCLUDE directory
symlink_maybe_no_target ../NAMES_COM/names_client.h INCLUDE/names_client.h &&
symlink_maybe_no_target ../NAMES_COM/names_prototypes.h INCLUDE/names_prototypes.h &&
symlink_maybe_no_target ../NAMES_COM/names_server.h INCLUDE/names_server.h &&
symlink_maybe_no_target ../PROBE_COM/PT_com.h INCLUDE/PT_com.h &&
symlink_maybe_no_target ../PROBE_COM/PT_server.h INCLUDE/PT_server.h &&
symlink_maybe_no_target ../PROBE_COM/PT_server_prototypes.h INCLUDE/PT_server_prototypes.h &&
symlink_file ../AISC_COM/C/aisc_func_types.h INCLUDE/aisc_func_types.h &&
symlink_file ../AISC_COM/C/aisc_global.h INCLUDE/aisc_global.h &&
symlink_file ../AISC_COM/C/client.h INCLUDE/client.h &&
symlink_file ../AISC_COM/C/client_types.h INCLUDE/client_types.h &&
symlink_file ../AISC_COM/C/client_privat.h INCLUDE/client_privat.h &&
symlink_file ../AISC_COM/C/server.h INCLUDE/server.h &&
symlink_file ../AISC_COM/C/struct_man.h INCLUDE/struct_man.h &&
symlink_file ../ARBDB/ad_cb.h INCLUDE/ad_cb.h &&
symlink_file ../ARBDB/ad_cb_prot.h INCLUDE/ad_cb_prot.h &&
symlink_file ../ARBDB/ad_config.h INCLUDE/ad_config.h &&
......
WINDOW/aw_awar_defs.hxx 0 → 100644
View file @ 2812ff18
#ifndef AW_AWAR_DEFS_HXX
#define AW_AWAR_DEFS_HXX
#define AWAR_DB "tmp/nt/arbdb/"
#define AWAR_DB_PATH AWAR_DB "file_name"
#define AWAR_DB_TYPE AWAR_DB "type"
#define AWAR_DB_FILTER AWAR_DB "filter"
#define AWAR_DB_NAME AWAR_DB_PATH "_without_path" // awar is automatically updated when AWAR_DB_PATH changes
#define AWAR_DEFAULT_ALIGNMENT "presets/use" // has to match ../ARBDB/arbdb.h@GB_DEFAULT_ALIGNMENT
#define AWAR_TREE "focus/tree_name"
#define AWAR_TREE_REFRESH "tmp/focus/tree_refresh" // touch this awar to refresh the tree display
#define AWAR_CONFIGURATION "focus/configuration"
#define AWAR_SECURITY_LEVEL "tmp/etc/security_level"
#define AWAR_GDE_EXPORT_FILTER "tmp/gde/export_filter"
#define AWAR_GDE_FILTER "tmp/gde/filter"
#define AWAR_DB_COMMENT "description"
#define AWAR_PT_SERVER "nt/pt_server"
#define AWAR_TARGET_STRING "nt/target_string"
#define AWAR_PRIMER_TARGET_STRING "nt/primer_target_string"
#define AWAR_GENE_CONTENT "nt/gene_content"
#define AWAR_MAX_MISMATCHES "nt/max_mismatches"
#define AWAR_ITARGET_STRING "nt/itarget_string"
#define AWAR_EXPERT "nt/expert"
#define AWAR_SAI_COLOR_STR "tmp/sai_color_str" // to visualize SAIs in probe Match window
// local awars for edit and edit4:
#define AWAR_SPECIES_NAME_LOCAL "tmp/edit/species_name" // string: name of selected species
#define AWAR_CURSOR_POSITION_LOCAL "tmp/edit/cursor_position" // int: position in sequence [0..N-1]
#define AWAR_EDITOR_ALIGNMENT "tmp/edit/alignment" // string: alignment used by editor
// global awars
#define AWAR_CURSOR_POSITION "tmp/focus/cursor_position" // int: position in sequence range=[1;len]
#define AWAR_SET_CURSOR_POSITION "tmp/focus/set_cursor_position" // int: set position in sequence (remote control for ARB_EDIT4) range=[0;len-1]
#define AWAR_SPECIES_NAME "tmp/focus/species_name" // string: name of selected species
#define AWAR_INFO_BUTTON_TEXT "tmp/focus/info_button_text" // string: to display selected species
#define AWAR_ORGANISM_NAME "tmp/focus/organism_name" // string: name of selected organism (differs from AWAR_SPECIES_NAME only for pseudo-gene-species)
/* - normally AWAR_ORGANISM_NAME contains the same value as AWAR_SPECIES_NAME
- if AWAR_SPECIES_NAME contains the name of a pseudo gene-species then AWAR_ORGANISM_NAME
contains the name of the species the pseudo gene-species originated from */
// #define AWAR_EXPERIMENT_NAME "tmp/focus/experiment_name" // string : name of selected experiment
#define AWAR_SAI_NAME "tmp/focus/sai_name" // string : name of selected SAI (e.g. in EDIT4 and 'Manage SAI')
#define AWAR_SAI_GLOBAL "tmp/focus/sai_global" // string : name of selected SAI in EDIT4/Visualize SAI Tool - used in RNA3D Tool
#define AWAR_HELIX_NAME "tmp/focus/helix_name" // string: name of selected helix, for helix numbers append _NR, get default by GBT_get_default_helix
#define AWAR_ERROR_MESSAGES "tmp/message/displayed" // error-messages: display awar
#define AWAR_FOOTER "tmp/LeftFooter" // mode line (showing help for selected mode)
#define AWAR_FOOTER_MAX_LEN 100 // max allowed textlen for mode line
#define AWAR_AWM_MASK "tmp/awm_mask"
#else
#error aw_awar_defs.hxx included twice
#endif
debian/copyright
View file @ 2812ff18
......@@ -103,7 +103,30 @@ Files-Excluded: arbsrc*/AISC_COM/C
arbsrc*/UNIT_TESTER/reporter.pl
arbsrc*/UNIT_TESTER/sym2testcode.pl
arbsrc*/UNIT_TESTER/test_helpers.h
arbsrc*/W*
arbsrc*/WETC
arbsrc*/WINDOW/AW_*
arbsrc*/WINDOW/Makefile
arbsrc*/WINDOW/aw_Xm.hxx
arbsrc*/WINDOW/aw_advice.hxx
arbsrc*/WINDOW/aw_at.hxx
arbsrc*/WINDOW/aw_awar.hxx
arbsrc*/WINDOW/aw_awars.hxx
arbsrc*/WINDOW/aw_b*
arbsrc*/WINDOW/aw_c*
arbsrc*/WINDOW/aw_d*
arbsrc*/WINDOW/aw_e*
arbsrc*/WINDOW/aw_f*
arbsrc*/WINDOW/aw_g*
arbsrc*/WINDOW/aw_k*
arbsrc*/WINDOW/aw_m*
arbsrc*/WINDOW/aw_n*
arbsrc*/WINDOW/aw_p*
arbsrc*/WINDOW/aw_q*
arbsrc*/WINDOW/aw_r*
arbsrc*/WINDOW/aw_s*
arbsrc*/WINDOW/aw_w*
arbsrc*/WINDOW/aw_x*
arbsrc*/WINDOW/needs_libs.libWINDOW_so
arbsrc*/X*
arbsrc*/bin
arbsrc*/doc
......
debian/rules
View file @ 2812ff18
......@@ -37,7 +37,7 @@ config.makefile: config.makefile.template
override_dh_auto_build:
ln -s TEMPLATES INCLUDE
for header in CORE/*.h UNIT_TESTER/*.h ; do ln -s ../$${header} INCLUDE/`basename $${header}` ; done
for header in CORE/*.h UNIT_TESTER/*.h SL/CB/*.h WINDOW/*.hxx ; do ln -s ../$${header} INCLUDE/`basename $${header}` ; done
ln -s /usr/include/valgrind/valgrind.h INCLUDE/valgrind.h
ln -s ../AISC_COM/AISC PROBE_COM/AISC
mkdir bin
......